Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04706 ATGAGGATTTCAACACTTGTTGTTGTCGTAGTAGTTTTGTTCCTTGTGTCTTCAATTCTAGTACTTGGTCAAGAAAAGTTAGATAAAGAAACAACTCTGAGAGTGCTTTTGGAAGTGAAAAAGTCTTTTGTACAAGACCCAGAAAATGTTTTGGGTGATTGGTTAGAAGAAAACACAGATTACTGTAGTTGGAGAGGTGTTTCATGTAGGTTGAACTCGTTGGTTGATGACTCGGTGCATGTGGTGGGACTCAATCTTTCTGACTCGTCACTCACCGGGTCGGTTTCACCTGAACTCGGTCGTTTGAGAAATTTGATTTATCTTGATCTTTCTTCTAATGGTCTCACGGGTCCTATTCCATTGAATCTCTCTAAACTTGCTTCATTAGAATCTCTGCTTCTGTTTTCTAACCAACTCAATGGTTCTGTTCCCACTGAGTTTGGCTCGCTCACGAGTCTCCGAGTTATGCGACTCGGTGACAATGCGTTAACCGGTATGATTCCAGCGTCTCTTGGGAACTTGGTTAACTTGGTCAGTCTTGGTTTAGCTTCATGTGAGTTAACCGGTTCGATTCCACCTGAACTCGGTCAACTCAGTCTCATGGAGAATTTAGTCCTACAGGAGAATGAGTTGATGGGTCCGATTCCGTCCGAGTTAGGAAACTGCTCAAGCCTCGTAACATTCACTGCTGCTAACAACAAACTCAATGGCTCAATTCCGAGTGAATTGGGTCAACTCAAGAATCTACAAATCCTCAACCTTGGTAACAATAGTTTAACAGGGGAGATTCCGAGTCAACTCGGTAATATGAGTGAACTCGTTTATCTCAATTTCATGGGGAACCAGCTTGAAGGTGCAATTCCACCATCTCTAGCTCAACTGGGTAACCTTCAAAAACTTGACTTGTCTATGAACAAGCTCAATGGAGGGATTCCAGAAGAGTTTGGAAACATGGGTCAGTTAAGTTTCATGGTTCTGTCTGGTAACAACCTTAATAGTGTCATACCAAGAACATTATGTTCCAATGCAACAAACTTGGAGCATTTGATGCTATCAGAAAATGGACTCTATGGTGAAATTCCAGCTGAATTGAGTCAGTGTCAGTCACTGAAACAACTTGACTTGTCGAACAATTCGCTCAACGGATCCATACCTCTTGAGATTTATGGGTTGGTGGAGTTAACTGATCTTTTGTTAAACAACAATAGTTTGGTTGGTTCCATCTCTCCATTCATAGGGAACTTCAGCAACTTGCAGACACTTGCATTGTATCACAACAATTTGAAGGGTGATCTTCCCAGAGAGATTGGAATGCTTGGGAAGTTGGAAATTTTATATCTTTATGATAATCAATTATCTGGGGCTATACCTATGGAGATTGGCAACTGTTCAAGCTTGCAAATGATCGATTTCTTTGGCAACAGGTTTGCGGGGGAAATTCCCATCACTATTGGAGGGCTGAAAGAGTTGAATTTTCTTCACCTCAGGCAGAATGAGCTTGTGGGTGAAATTCCTTCCAGTTTAGGCAACTGTCATAAACTGAAGATCATGAGTTTGGCTGACAATCGGCTCTCCGGTGCAATTCCTGCAACATTTGGATTCCTCAAGTCATTGCAGCAGCTCATGCTCTACAACAATTCTCTAGAAGGTAACCTTCCTCACCAATTGATAAATGTAGCAAACTTGACTAGAGTGAATCTTTCAAAGAACAGATTGAATGGTAGTATAGCTGCATTGTGTAGCTCTCGATCGTTTATTTCTTTTGATGTTACTGACAATGAGTTTGACGGTGAAATTCCCCCTCAATTGGGAAACTCGCCTTTCCTGAAGAGGCTAAGTTTAGGTAACAACAATTTTTCTGGTGAAATTCCAAAGACCTTGACAAAAATCCATGACCTGTCACTGTTAGATCTGTCAGAAAATTCGCTCACTGGACCAATACCCGCCGAACTTTCTTTGTGTAATAAACTGGCATACATTGATTTGAACAGTAATCTTCTTAATGGACAAATACCATCATGGTTTGGAAAATTGCCTCAGCTGGGAGAGCTTAAGCTCTCTTCCAATAACTTTTCTGGACCTCTTCCATTAGGTCTATTCAAATGTTCCAAATTACTAGTTCTCTCTCTCAATGACAACTCACTCAATGGAAGCCTCCCAGCTGATATAGGCGGTCTTACATATCTTAATGTCCTAAGACTTGACCGTAATGAGTTCTCGGGACCAATCCCTCGCGAGATAGGTAAGTTGAGCAAGCTTTATGAGCTCCGACTCTCTAGGAATAGCTTTAACGGGGAGATGCCAAGTGAGATTGGAAAGCTTCAAAATCTACAAGTCATTTTAGACCTCGGTTACAATAATCTCTCGGGTGGCATACCACCTTCTCTAGGGACCATGTCGAAATTAGAAACACTTGATCTTTCTCACAATCAACTTACTGGTGAAATCCCTCCACAAGTTGGTGAAATGAGCAGCTTGGAAAAGCTTGATCTCTCTTACAACAACCTTCAAGGGAAATTAGACAAGAAATTCTCCCGGTGGCCAAATGAGGTATTTAAGGGAAACTTAAATCTTTGTGGAAGCCCTCTTGTCCGCTGCGATGGTGATGGTACTTCTGGCAGTAAGCCGTCGGGTCTAAGTGAGTCATCGGTAGTGATGATATCTGTTGTTTCAACTTTAGCTGCGATTGCACTATTGATACTTTCAGTAAGAATCTTCTGCAAAAACAAGCAAGATTTTTCTAGGGAAGACAGCAAAGTGACTTCTTATGTATACTCTTCCTCGTCGTCGCAAGCACAGAGACGACCGCTTTTCCAGCTAAGAGCTGCTGGAAAGATGGATTTCAGGTGGGAAGATATCATGGATGCAACGAACAATCTAAATGATGAGTTCATGATTGGTTCAGGAGGTTCAGGGAAAATCTACAAAGCCGAATTGGCCACCGGAGAGACTGTTGCTGTCAAGAAGATTTCATCAAAAGATGGTTTTCTGCTAAACAAAAGCTTCTTAAGAGAAGTTAATACACTGGGGAGAATAAAGCATAGACATCTGGTGAAGCTAATAGGGTTCTGTAGCAATAGAAACAAAGGAGCAGGTTGGAATCTTTTGATATATGAGTACATGGAGAATGGAAGTTTATGGGATTGGCTTCATGGAAAACCAGGCAATGCGAGCAAAGTAAAGAAGAGCCTTGATTGGGAGACAAGGTTCAAAATTGCTGTGGGATTAGCTCAAGGAGTGGAGTACCTGCATCACGATTGTACACCAAAGATCATTCACAGAGATATCAAATCGAGTAACATATTGCTAGATTCCAAAATGGAGGCACACTTGGGAGATTTTGGACTGGCAAAAGCACTCATTGAAAGTGATGACTCTAATACTGAGTTGAATTCTTGTTTTGCTGGGTCTTATGGCTACATGGCTCCAGAGTATGCGTTCTCCCTGCATTCAACAGAAAAGAATGATGTTTTCAGCATGGGAATAGTTCTTATGGAACTTGTTAGTGGTAAAATGCCAACAAGTGACTTTTTTGGAGCTGATATGGACATGGTGAGATGGGTAGAGATGCATATTGACATGCATGGCTCTACATGTGAGAAACTGATAGACCCTGAACTGAAACCTCTTTTACCTAGTGAAGAGTTTGCTGCATTCCAAGTGCTTGAGATAGCCTTGCAGTGCACAAAAGCTACACCACAGGAGAGACCATCTTCAAGGAAAGCATGTGATCTTCTCATCCATGCATTCAATAACAGAATGATGGACTTTGGGAAGAATAATCTGGCTAGTTACAAGTAA 3801 0.4157 MRISTLVVVVVVLFLVSSILVLGQEKLDKETTLRVLLEVKKSFVQDPENVLGDWLEENTDYCSWRGVSCRLNSLVDDSVHVVGLNLSDSSLTGSVSPELGRLRNLIYLDLSSNGLTGPIPLNLSKLASLESLLLFSNQLNGSVPTEFGSLTSLRVMRLGDNALTGMIPASLGNLVNLVSLGLASCELTGSIPPELGQLSLMENLVLQENELMGPIPSELGNCSSLVTFTAANNKLNGSIPSELGQLKNLQILNLGNNSLTGEIPSQLGNMSELVYLNFMGNQLEGAIPPSLAQLGNLQKLDLSMNKLNGGIPEEFGNMGQLSFMVLSGNNLNSVIPRTLCSNATNLEHLMLSENGLYGEIPAELSQCQSLKQLDLSNNSLNGSIPLEIYGLVELTDLLLNNNSLVGSISPFIGNFSNLQTLALYHNNLKGDLPREIGMLGKLEILYLYDNQLSGAIPMEIGNCSSLQMIDFFGNRFAGEIPITIGGLKELNFLHLRQNELVGEIPSSLGNCHKLKIMSLADNRLSGAIPATFGFLKSLQQLMLYNNSLEGNLPHQLINVANLTRVNLSKNRLNGSIAALCSSRSFISFDVTDNEFDGEIPPQLGNSPFLKRLSLGNNNFSGEIPKTLTKIHDLSLLDLSENSLTGPIPAELSLCNKLAYIDLNSNLLNGQIPSWFGKLPQLGELKLSSNNFSGPLPLGLFKCSKLLVLSLNDNSLNGSLPADIGGLTYLNVLRLDRNEFSGPIPREIGKLSKLYELRLSRNSFNGEMPSEIGKLQNLQVILDLGYNNLSGGIPPSLGTMSKLETLDLSHNQLTGEIPPQVGEMSSLEKLDLSYNNLQGKLDKKFSRWPNEVFKGNLNLCGSPLVRCDGDGTSGSKPSGLSESSVVMISVVSTLAAIALLILSVRIFCKNKQDFSREDSKVTSYVYSSSSSQAQRRPLFQLRAAGKMDFRWEDIMDATNNLNDEFMIGSGGSGKIYKAELATGETVAVKKISSKDGFLLNKSFLREVNTLGRIKHRHLVKLIGFCSNRNKGAGWNLLIYEYMENGSLWDWLHGKPGNASKVKKSLDWETRFKIAVGLAQGVEYLHHDCTPKIIHRDIKSSNILLDSKMEAHLGDFGLAKALIESDDSNTELNSCFAGSYGYMAPEYAFSLHSTEKNDVFSMGIVLMELVSGKMPTSDFFGADMDMVRWVEMHIDMHGSTCEKLIDPELKPLLPSEEFAAFQVLEIALQCTKATPQERPSSRKACDLLIHAFNNRMMDFGKNNLASYK 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04706 1266 Pfam Leucine Rich Repeat 248 269 IPR001611 GO:0005515
Vivi5g04706 1266 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 194 287 - -
Vivi5g04706 1266 PANTHER UNNAMED PRODUCT 535 1174 - -
Vivi5g04706 1266 Pfam Leucine rich repeat 513 572 IPR001611 GO:0005515
Vivi5g04706 1266 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 578 870 - -
Vivi5g04706 1266 SMART LRR_typ_2 246 270 IPR003591 -
Vivi5g04706 1266 SMART LRR_typ_2 535 559 IPR003591 -
Vivi5g04706 1266 SMART LRR_typ_2 318 342 IPR003591 -
Vivi5g04706 1266 SMART LRR_typ_2 294 317 IPR003591 -
Vivi5g04706 1266 SMART LRR_typ_2 174 198 IPR003591 -
Vivi5g04706 1266 SMART LRR_typ_2 750 774 IPR003591 -
Vivi5g04706 1266 SMART LRR_typ_2 391 415 IPR003591 -
Vivi5g04706 1266 SMART LRR_typ_2 344 367 IPR003591 -
Vivi5g04706 1266 SMART LRR_typ_2 487 511 IPR003591 -
Vivi5g04706 1266 SMART LRR_typ_2 126 149 IPR003591 -
Vivi5g04706 1266 SMART LRR_typ_2 678 702 IPR003591 -
Vivi5g04706 1266 SMART LRR_typ_2 150 173 IPR003591 -
Vivi5g04706 1266 SMART LRR_typ_2 439 463 IPR003591 -
Vivi5g04706 1266 SMART LRR_typ_2 799 821 IPR003591 -
Vivi5g04706 1266 SMART LRR_typ_2 823 854 IPR003591 -
Vivi5g04706 1266 SUPERFAMILY Protein kinase-like (PK-like) 944 1246 IPR011009 -
Vivi5g04706 1266 Gene3D Transferase(Phosphotransferase) domain 1 1041 1261 - -
Vivi5g04706 1266 ProSiteProfiles Leucine-rich repeat profile. 801 823 IPR001611 GO:0005515
Vivi5g04706 1266 Gene3D Ribonuclease Inhibitor 290 385 IPR032675 -
Vivi5g04706 1266 Gene3D Ribonuclease Inhibitor 386 480 IPR032675 -
Vivi5g04706 1266 SUPERFAMILY L domain-like 340 667 - -
Vivi5g04706 1266 SUPERFAMILY RNI-like 83 405 - -
Vivi5g04706 1266 FunFam Uncharacterized protein 387 480 - -
Vivi5g04706 1266 Gene3D Phosphorylase Kinase; domain 1 919 1040 - -
Vivi5g04706 1266 FunFam Leucine-rich repeat receptor-like protein kinase 1041 1262 - -
Vivi5g04706 1266 Gene3D Ribonuclease Inhibitor 481 581 IPR032675 -
Vivi5g04706 1266 Pfam Leucine rich repeat N-terminal domain 34 69 IPR013210 -
Vivi5g04706 1266 Pfam Leucine Rich repeats (2 copies) 801 839 IPR025875 -
Vivi5g04706 1266 SUPERFAMILY L domain-like 605 863 - -
Vivi5g04706 1266 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 921 1040 - -
Vivi5g04706 1266 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1091 1103 IPR008271 GO:0004672|GO:0006468
Vivi5g04706 1266 Pfam Protein kinase domain 965 1243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04706 1266 ProSitePatterns Protein kinases ATP-binding region signature. 966 989 IPR017441 GO:0005524
Vivi5g04706 1266 ProSiteProfiles Protein kinase domain profile. 960 1251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04706 1266 SMART serkin_6 960 1251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04706 1266 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 29 193 - -
Vivi5g04706 1266 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 288 386 - -
Vivi5g04706 1266 Gene3D Ribonuclease Inhibitor 228 289 IPR032675 -
Vivi5g04706 1266 Gene3D Ribonuclease Inhibitor 31 147 IPR032675 -
Vivi5g04706 1266 PRINTS Leucine-rich repeat signature 370 383 - -
Vivi5g04706 1266 PRINTS Leucine-rich repeat signature 799 812 - -
Vivi5g04706 1266 Gene3D Ribonuclease Inhibitor 582 869 IPR032675 -
Vivi5g04706 1266 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 481 577 - -
Vivi5g04706 1266 Gene3D Ribonuclease Inhibitor 148 227 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04706 Vivi-Chr5 145903902 145908535 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04706 5 744 Receptor kinase-like Gene Family AT1G17750 34.631 3.52e-101 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi5g04706 Pkinase 6.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04706 - - gmx:100801889 2014.58