Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04704 ATGGCTTCATCAAAGGTTGAAATTGCTTCCTTTGATTCAGCACAAAAACCAACATGGGTTTCAAGAGTTGCTAAGAATAAGAACTTTGGAAATTTGAATTTGAATAAAAGGTTTCATAATGTGTTTGGTGAAAAAGATGAATCTTCTTTATCTGCATTGGTGAGTCCGCGACACACGAAGATAATCGATCGGTGGGCTGCGAGACAAGCTCAAGAAGTGGTGAGGAATCTTGAAAAGAATAATGAGGGTGTTGCTGATAAGGTGTTTGATCATTTTCCTTCACGGTCGTCGAGTTTTAATTCTAGAAGAGGTAGAGAAGTTTCCGCTTCACCACCTCTTTCGGATGAATTGTTTGAAAGTGAAAAAACATCCAAACTTGGTGCTTCTTCTCTTGTTCAGATATGGGAAAAAAGACTCAGCCAATCCAATTGCAAGAAACAAAATGCACCGTCGATTGGAAGCACAAGTTCTGATTTGAGTAGTAATGAGATAAGTGTGTTTTCTATGGAAGATCATAGCAGGGTCTCGGAAGAAGAGGAATCTTCTGATGAGTTGTTTCAAAGTTGTGCTTCGAAAGTGCATTGTAATTCAGATGCTGGTGAAAGTGATAAAAATAAGGTTGCCGATATTATAAAGAAGCTATCGATTAAAAATCAAAAGCAAAGTGATGAGAATGATCATGAGTCAAGTAACAGCGGGACAGGTTCTCCATGCGTTTCCACGCCAAAACAATTATCTGAACGTAGATGTTTCGGTAAGGTCACATGCTACCCACGTATTAGGGGGCGCCAAGCATTCAATGATTTAATTATGCAGTTTGAGAGTGATCGACATGGAGAGCTCAACAATCTTGCAGAGCAAGGCGCAGTTTCTAAGTTCACACAAAGAGGTCGTATTCAGTCATTGCTTCGACTTAGATTATTACAGCGTGGAGTGGCAGCTTTTGATCCATCCCGTTTGAAATCAACAACACCTGAAGGGAACAAACAACAAGGATCAGTAATTATGCAACTTAGGGAAAGATTTAGCACAAGAGATGAACAAAGAAATTCATCCTTGATTGAATTGTCAAAGCCAAGGTTGATACCAAAGAATCTAGTGTCTCAAACTAGTGCATATATCAAAGAAGAAGCTCATTTATGTTCTGGTTTTGAAGCTCCAAACGATGCTCCAAAAGAAACCATTGAGGCATCATCATCGCAGACTGGTTCAAACACAAACATTGAAACTCCTGATAATGTAGAGACAAGAGACCAACTATCTTATGATACTATTGAAACCAGTTGCAGCGAGATAATGGAAGAAAATGATTGTAGTGACTATAATTATGATGAAACTAGAGAAAGTCATGATTGGGCCAGTCTCATTTCTCGGCCTAGAAGCTACTGGGAGGAACTTAGACAAGAATGGTACAGAGAAATGCTTAACTCTGGTTCCCATAATGACGAGAGACGCAAGCTCCTTGAAAGAAGAACAGTTTCAACCGTCCTTTCTAGCGACTTCCGAGAAAAGATGGATAAATTGATGAAATCTCATAGGGGAACACAGACACGTCTAATCAATAATCAAAGCGACGAGGAAGACCGAGAAGGAAATATGCAACAATTGTCAGCATTTTTTCACGACCGATTCCATGTTAGAGGTGATCTCGAAGAAAATGGAAGAGATATAAAAGAAAAAGAGGTGGCAGTGGAAGAGGAAAGCATCAATAGTGGTTCAGATCATGAACTTGCTGATTGTCAATCCTCATCATCTGTAGATTCACCATCATCAGCAACATGGAGTTACGGAGACACTGATGGTGCAGATGATTCTGATAGAGTTGTATTTGTATCCTCACCATTGCCTTCACAATCTCAATCCTTCTATCGAGATAATAGGCAATACTCTCCATCGACAAACCATCAACCAATTGATATGGAATTCGTATACGATATGCGAGGGCAAATGGAACAACTTTTCCGCGAGATGTCTGAGCTAAGGGAAACACTAAAATATTGCACAGACATGAATATGCAATTACAACAATCCCAGAAACAAGAAGTTCACAAAGTAAGAGAAAAGAAATTCACCAATAAAACATCAAAGAAAGGAAAATGTCGCATTTGCAAGGAGAATAAAGCAAACGCAGTTTTATATAGATGTGGGCACATGTGTGCATGTTTCAAATGTGCGAGTGAGTTGCAATGGAAAAGTGGAAAATGTCCAATATGCCAAGTTGAAATAATAGATGTTGTTCAAGTATATACTAACACATAA 2259 0.39 MASSKVEIASFDSAQKPTWVSRVAKNKNFGNLNLNKRFHNVFGEKDESSLSALVSPRHTKIIDRWAARQAQEVVRNLEKNNEGVADKVFDHFPSRSSSFNSRRGREVSASPPLSDELFESEKTSKLGASSLVQIWEKRLSQSNCKKQNAPSIGSTSSDLSSNEISVFSMEDHSRVSEEEESSDELFQSCASKVHCNSDAGESDKNKVADIIKKLSIKNQKQSDENDHESSNSGTGSPCVSTPKQLSERRCFGKVTCYPRIRGRQAFNDLIMQFESDRHGELNNLAEQGAVSKFTQRGRIQSLLRLRLLQRGVAAFDPSRLKSTTPEGNKQQGSVIMQLRERFSTRDEQRNSSLIELSKPRLIPKNLVSQTSAYIKEEAHLCSGFEAPNDAPKETIEASSSQTGSNTNIETPDNVETRDQLSYDTIETSCSEIMEENDCSDYNYDETRESHDWASLISRPRSYWEELRQEWYREMLNSGSHNDERRKLLERRTVSTVLSSDFREKMDKLMKSHRGTQTRLINNQSDEEDREGNMQQLSAFFHDRFHVRGDLEENGRDIKEKEVAVEEESINSGSDHELADCQSSSSVDSPSSATWSYGDTDGADDSDRVVFVSSPLPSQSQSFYRDNRQYSPSTNHQPIDMEFVYDMRGQMEQLFREMSELRETLKYCTDMNMQLQQSQKQEVHKVREKKFTNKTSKKGKCRICKENKANAVLYRCGHMCACFKCASELQWKSGKCPICQVEIIDVVQVYTNT 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04704 752 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 674 750 IPR013083 -
Vivi5g04704 752 MobiDBLite consensus disorder prediction 512 531 - -
Vivi5g04704 752 PANTHER BNAC05G24000D PROTEIN 402 751 - -
Vivi5g04704 752 MobiDBLite consensus disorder prediction 215 242 - -
Vivi5g04704 752 MobiDBLite consensus disorder prediction 393 418 - -
Vivi5g04704 752 MobiDBLite consensus disorder prediction 384 418 - -
Vivi5g04704 752 ProSiteProfiles Zinc finger RING-type profile. 700 739 IPR001841 -
Vivi5g04704 752 Pfam Zinc finger, C3HC4 type (RING finger) 697 744 - -
Vivi5g04704 752 Coils Coil 67 87 - -
Vivi5g04704 752 SMART ring_2 700 738 IPR001841 -
Vivi5g04704 752 MobiDBLite consensus disorder prediction 551 600 - -
Vivi5g04704 752 MobiDBLite consensus disorder prediction 551 573 - -
Vivi5g04704 752 CDD mRING-HC-C3HC5_NEU1 697 749 - -
Vivi5g04704 752 MobiDBLite consensus disorder prediction 228 242 - -
Vivi5g04704 752 MobiDBLite consensus disorder prediction 143 162 - -
Vivi5g04704 752 MobiDBLite consensus disorder prediction 574 598 - -
Vivi5g04704 752 MobiDBLite consensus disorder prediction 95 118 - -
Vivi5g04704 752 SUPERFAMILY RING/U-box 699 745 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04704 Vivi-Chr5 145877441 145881150 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04704 699 752 C3H Transcription Factor Family AT3G06140 35.185 2.96e-06 48.1