Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04694 ATGGTTGCCCAACACCCGCAACTTCAGATTCAGACTCAACAACCTACGCCTTCTCCTCAAGATGAAGCCTTGAAGAGAAACACCGATTGTGTCTACTTTCTTGCTTCTCCCTTGACATGCAAAAAGGGAAATGAATGCGAGTACCGCCATAGTGAGTATGCTCGAGTAAATCCTAGAGATTGCTATTATTGGTTGAATGGTAACTGCTTGAATCCCAAGTGTTCATTCCGCCATCCGCCTCTTGACGGGTTGTTAGGAACACCACCGGCAACTGCTGCTGCCGGGCCATCTGTACCCGTGCCACAAACTGCGACAACATCTGCAGCACACACACCTTATAATTCCAGCAAACAAGCCGTTCCTTGCATTTTCTTCCAAAAGGGATTTTGCCTAAAAGGAGACCGATGTGCCTTCTTGCATGGACCAAATCCTAACAATGGCAGTAAAATAGCTTCACAGGGCTCGATGAACAACCAAGGAGTTGAGAATCCAAATTTTAAGAAACCTTTTGCCGGCACTGAAAAACATACACAGGAAAGGAAAACTTCCCAAGCAAATGTTGGAGGTGCAGCTGAAGCTAAACCTGTCAAAAAATTTGAAACTGCTCCACAGAAAAATATATTTAAATTGGAGAAGCCTGTGTCAACGACTCTACCTGCAGGATATGACAACGAGGCTTCAAGATTTAAGACACCTAGTTCTCCACCGCCGACCAACGGGCCTAACGTAGCTCGGTCTAATCGCGTGCATCAACCTCGGTTGCCAGATGATCACAGTTTCCATAGTGGTAAGGACAGTGACGAGTTTCTCAGAGAATCGTCTCCAGGGTTTGATGTTCTTGTAGCTGACGAACTTAGGAATTCTGATTACTACCACGGGGAAGATGAATTTGGTATAACAAGAGGTCAAGATGAAAGAGGCCTGGACCCTTTGAATGAATATGACATGGGGCATTCTGCTGATTATAGTTTGGCTGCTGATATTGATCGAGATAGATTTCGTGTGCCCCAAGGTTATGACTCATATGATCACATGCAAGAGCCATATGGTTGGGATCATAGGAAGGCATCAACCCATACAGAAAGGACTCGTAACAATTCTCGCAGTCCTGACAGTGTTGAGGTCTCAGATCTCCGACATCGTTTATCCAAGCGCAGGAAGGGTCTTAAATCTGTCGTCACTCATGATGATGATCAAAGTCGTCGATTCTCTCGGAAAGATTCACTCCATTTACCTTCGAATGAGAGACCCGTCAATAATCGTTTCCGGGGAAGAATAACGCTTCCACCTAATGGTGGTGAGGGTCACCTAGAGAGGGACTTAGACAGAGGAAGGGACTTAGACAGAGGAAGGGACCTGGACAGAGGAAGGGACTTGGATAGAGGAAGAATCAGTAGCAGGTTGTCATCTGGAAGGCTGCAGCCTCCTCACGAGGGAAGGATCCACGATAGAATGAGAGACAGGTTGTCAGATGATGAGAGGAAAAACATCAGAGGTCGATCGATGGGAGACAGAAGTGGGTTCTCTGCACCTAAAAGTCTTGCTGAACTCAAATATGGGAGGAACACTGAAAATCCGGAGCAACAATCATTGGGAAAGAGGAAAAACTACCAACAATATGAAGATGATGTTCCATTTGAAGGTCCAAAACCTCTTAGTGAAATTCTGAAGGAGAAGAAAGGAGTTGTTGGAGCTGGTGCAGCCTCCTCCCAGAGCAGCAAATCAGCCTATGATAATAAGAATGAAGTAATAACCGAAAACGGAGCATTGTTAGAGACCAAGAATCAGGCTACTGATGTTGTTGGAAGAGAGGTTGAAAACACTGTTGTAACTCATCAGTCGCCTGAGGATGGAATAATATACGATGAAGCTGCCGAAGATCAAGAGTACGAAGGCGGTGATCAAGGAGAGGAGGAGGGAGACTATGAATACGAACAAGGTGATGAGGAGTACGAGTACGAACAAGTCGAAGAGGGGGAAAATCAAGAGCAAGAATACATGGAAGAAGATGAAGATGGAGATGACTTTGCCAAGAAGATAGGTGTTGTTGTTTCATAA 2058 0.4534 MVAQHPQLQIQTQQPTPSPQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCYYWLNGNCLNPKCSFRHPPLDGLLGTPPATAAAGPSVPVPQTATTSAAHTPYNSSKQAVPCIFFQKGFCLKGDRCAFLHGPNPNNGSKIASQGSMNNQGVENPNFKKPFAGTEKHTQERKTSQANVGGAAEAKPVKKFETAPQKNIFKLEKPVSTTLPAGYDNEASRFKTPSSPPPTNGPNVARSNRVHQPRLPDDHSFHSGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGITRGQDERGLDPLNEYDMGHSADYSLAADIDRDRFRVPQGYDSYDHMQEPYGWDHRKASTHTERTRNNSRSPDSVEVSDLRHRLSKRRKGLKSVVTHDDDQSRRFSRKDSLHLPSNERPVNNRFRGRITLPPNGGEGHLERDLDRGRDLDRGRDLDRGRDLDRGRISSRLSSGRLQPPHEGRIHDRMRDRLSDDERKNIRGRSMGDRSGFSAPKSLAELKYGRNTENPEQQSLGKRKNYQQYEDDVPFEGPKPLSEILKEKKGVVGAGAASSQSSKSAYDNKNEVITENGALLETKNQATDVVGREVENTVVTHQSPEDGIIYDEAAEDQEYEGGDQGEEEGDYEYEQGDEEYEYEQVEEGENQEQEYMEEDEDGDDFAKKIGVVVS 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04694 685 ProSiteProfiles Zinc finger C3H1-type profile. 24 53 IPR000571 GO:0046872
Vivi5g04694 685 MobiDBLite consensus disorder prediction 250 271 - -
Vivi5g04694 685 FunFam Zinc finger CCCH domain-containing protein 17 18 81 - -
Vivi5g04694 685 MobiDBLite consensus disorder prediction 566 580 - -
Vivi5g04694 685 MobiDBLite consensus disorder prediction 620 672 - -
Vivi5g04694 685 MobiDBLite consensus disorder prediction 435 465 - -
Vivi5g04694 685 MobiDBLite consensus disorder prediction 294 312 - -
Vivi5g04694 685 MobiDBLite consensus disorder prediction 356 551 - -
Vivi5g04694 685 MobiDBLite consensus disorder prediction 561 580 - -
Vivi5g04694 685 Gene3D - 106 182 - -
Vivi5g04694 685 Gene3D - 16 81 - -
Vivi5g04694 685 SUPERFAMILY CCCH zinc finger 117 141 IPR036855 GO:0046872
Vivi5g04694 685 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 21 683 - -
Vivi5g04694 685 MobiDBLite consensus disorder prediction 1 22 - -
Vivi5g04694 685 MobiDBLite consensus disorder prediction 153 198 - -
Vivi5g04694 685 SMART c3hfinal6 25 52 IPR000571 GO:0046872
Vivi5g04694 685 SMART c3hfinal6 116 142 IPR000571 GO:0046872
Vivi5g04694 685 SMART c3hfinal6 57 80 IPR000571 GO:0046872
Vivi5g04694 685 MobiDBLite consensus disorder prediction 294 314 - -
Vivi5g04694 685 MobiDBLite consensus disorder prediction 217 271 - -
Vivi5g04694 685 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 120 142 IPR000571 GO:0046872
Vivi5g04694 685 ProSiteProfiles Zinc finger C3H1-type profile. 55 81 IPR000571 GO:0046872
Vivi5g04694 685 ProSiteProfiles Zinc finger C3H1-type profile. 116 143 IPR000571 GO:0046872
Vivi5g04694 685 MobiDBLite consensus disorder prediction 356 381 - -
Vivi5g04694 685 MobiDBLite consensus disorder prediction 389 412 - -
Vivi5g04694 685 Pfam Zinc-finger containing family 25 79 IPR041686 -
Vivi5g04694 685 MobiDBLite consensus disorder prediction 608 685 - -
Vivi5g04694 685 MobiDBLite consensus disorder prediction 476 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04694 Vivi-Chr5 145678794 145682241 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi5g04694 zf-CCCH_3 5.3e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04694 - - gmx:100787836 743.806