Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04675 ATGGCTGTTCCAAGTTCTGTTTTGAAGTTAGAAGAAATTCAAGGAAGAGGAAGAGGAATAGTTGCATCTCAGCCTCTCAAAGCTGGACAAGTCATCCTCACAGATTCTCCAATCCTTCTCTACCCTACTTACCCCTTCTCTCAACAACACTCTTCTTCTTTTTGTGATCATTGTTTCAAATCTTGTTCCTCATCTTCACTTGTTTCATGCCCTTCTTGTCACCGATATCGTTTTTGCGATTCGACTTGTCTCTCAAAAGCTCTCAATTCCTCTCATTCTACCTTTGTTTGTCAGTCATTATCTAAATTACACTCCAATTCGCTTCTCCTTCAACAAACCGTCGAATGCCAACTCCAAGCTCGGTTTCTCATTGCTGCTTACAATCTTGCTGTTAACAACCCGACAAATTTTCAGATTTTGTTGTCTCTTCAGGGTTCTTTTGATAATGATGGTGCAGCTCAGTTCTTACACCCGATTATTTCATCGCTGTTTTCGCACCCGCATAATGAGTTGTTTTCTTTGCAACTCACTTCTTCACTTCTTGCTAAGGATAAGCTCAATGCTTTTGGTATAATGCATCCTTTCTCTGAGAATGATGGACATAGGTCTGTTAGAGCTTATGGTATTTACCCTTATGCGTCTTTTTTCAACCATGATTGTCTTCCCAATGCCTGTAGATTTGATTATGTTGACGTGAATCCACCTTATCATGCCGATGGTCTTAATAATACAGATTTTGTTATTAGGATGATTCATGATGTTCCTCAAGGTAGAGAGATTTGTTTGAGTTATTTCCCTGTTAATGAAAACTATTCTAGTAGGCAGAAAAGGTTGTTGGAAGACTATGGTTTTGCGTGTAATTGTGATCGATGTAATGTCGAATCGAATTGGTCAGATAATGAGAGTGTTGAAGAAAATGCAGAGGAGGATAAACAAGAGATTATGGTTATGGATGATGAGGAGGAGGACGAGCAATATGAAAATATGGAACCATCAGATACCGACAATAACGATTTCCCACATGCTTATTTCTTTTTGAAATACATGTGTGATAGAACAAATTGCGGGGGAACTTTAGCTCCTCTACCACCTAAGGGTGATGCATTATCTAATGTAATGGAATGTAATGTCTGTGGTAAATTGAAGAAGGATGATGACGACATCAATGTCGGTGATAATGGGCAAGATGGAGAAGTTCCCATGGAGGACTAA 1212 0.3911 MAVPSSVLKLEEIQGRGRGIVASQPLKAGQVILTDSPILLYPTYPFSQQHSSSFCDHCFKSCSSSSLVSCPSCHRYRFCDSTCLSKALNSSHSTFVCQSLSKLHSNSLLLQQTVECQLQARFLIAAYNLAVNNPTNFQILLSLQGSFDNDGAAQFLHPIISSLFSHPHNELFSLQLTSSLLAKDKLNAFGIMHPFSENDGHRSVRAYGIYPYASFFNHDCLPNACRFDYVDVNPPYHADGLNNTDFVIRMIHDVPQGREICLSYFPVNENYSSRQKRLLEDYGFACNCDRCNVESNWSDNESVEENAEEDKQEIMVMDDEEEDEQYENMEPSDTDNNDFPHAYFFLKYMCDRTNCGGTLAPLPPKGDALSNVMECNVCGKLKKDDDDINVGDNGQDGEVPMED 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04675 403 Coils Coil 300 320 - -
Vivi5g04675 403 Gene3D SET domain 19 291 IPR046341 -
Vivi5g04675 403 ProSiteProfiles SET domain profile. 3 265 IPR001214 GO:0005515
Vivi5g04675 403 Pfam SET domain 17 264 IPR001214 GO:0005515
Vivi5g04675 403 Gene3D - 111 188 - -
Vivi5g04675 403 SUPERFAMILY SET domain 5 286 IPR046341 -
Vivi5g04675 403 CDD SET_SMYD 186 291 - -
Vivi5g04675 403 SMART set_7 6 271 IPR001214 GO:0005515
Vivi5g04675 403 Gene3D - 54 106 - -
Vivi5g04675 403 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 3 387 IPR044238 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04675 Vivi-Chr5 145505341 145508994 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi5g04675 SET 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04675 - - psat:127097585 639.417