LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi5g04632	ATGATTGCAAACAAAGATCTTCGTAATGGTGTTGCTGACTCTGATGGTGAGAGTTCAAGGAGCAAGTTGTCAAGACCCAATTTTGAGCCTAACAAAGGTTACCCAGATGAGAAAGATGTTGTTTTCCTGAAGGATTCAGAGATGGGTGGTTCTGGTTCTGGTTCTGGTGTTGGTGTTGGTGGGTCTAACAATAACTCAGGTATGCAAGAACTAACCCTAAGCTATCTTTGTGGAAGTCAAAAATTGAGTCTTGGTGATAAAGATGTTCATGGTGAGAGTTTTTTGAAATCGTTGGAAAGAATGAGTCAAAAGGGTAAAGAGGTTATGGTTTCTGAGAATTCAAACCAAGATGGGAAATGGGTTGAGAGAGATTTTATGAGCTTGAGTGAAACGAGAGAGGATTCTTCAAAGAGATCTGTTGAAGAAGAAGATGTTGAAAGAGAAAGAGAGAGTGTTAGGGATAAGAAACCGAAGATTGAGACACTGAATCTCTCTCTTGCTTTACCTGATGTGTCTCTTTCTCTCACTGCTTCAAACGCCTTACATAATAATGGTGATCAGCAGCAGCAGCAACTGGTTAGGAACAAACCTAGTAGGCCTTCAACTACAGTCACTACTTATTCAACTGAGTATACAGCTCCTTCGTTGTCTTACTCGTACTCACACCCGTTTTCGCACAATCCAAGTTGCTCTATAACGCGGAATTCGACTGAGAATTTTGAGTTTTCCATGAGTAAAGATGATCATATTTGGAATTGTGGTGAAGGGACTAATGGTTCTGTTCATAGCAGGTTTAAACCTATAGGTGATGGTGCTGTTTCTCTGTCAAATCACGGAGGTGGAACCGGTATCAGTTCGTTCATGCAACAAGGGAATAATAGTCAGTATAAAACTACCAGTTCGGAAAATCATTCATTTTTTCCTTCTGAATTGCCAGCTAGGCCTAGATTTGAAGCTCATTCGGGAGATTCAAGAGGAAGAAACTCTGAGAATAATAGAGTGTTTGACGGTTTAGATGGTGGTAAGATGAGGAATGTTTCGAGACCGGAGAGAATTGTTAGGGAAATTGTTTCAGAATCTATCCCTATTGTTTCGCTGACAATTCAGGAGTTCACCGATGAAGTTGTAGCATCAACTCAGGAGTACTTGAAGAATCTGATTGAGAACAAGAGAGAAGAATTGGTCAGTCTTCAAAACCGGCTTGAGAGAAGGTCTGATCTTACCAAGGAGACTCTTTCAAAGGGCAATAAAGTTCAACTAGAGATTTTACTTGCCGTAAAGATGGGGCTTTCGAGCTTCTTATACGGTAATCTTCAATTATCTGAGATGGTAGAGATTTTCTTGTATAGGAGATGCAGAAATGTTACCTGCAAGAGTTTGCTTCCTGTTGATGATTGTGACTGTAAGATTTGCTCGGGAAATAAAGGGTTTTGTAGCTCTTGTATGTGTCCTATTTGTTTGAACTTCGACTGCGCAAGCAACACTTGTAGCTGGATTGGATGCGATGTTTGTTCGCACTGGTGCCATGCTGTCTGTGGCCTCCAAAGGAAGCTCATCAAACCAGGGCCTAGCTTGAAGGGGCCTTCTGGGACCTCGGAAATGCAGTTTCATTGTATTGGATGCGGACATGCCTCAGAAATGTTTGGATTCGTCAAAGACGTGTTCATGTGTTGTGCTAAGGATTGGGGACTTGAAACTTTGTTGAAAGAGCTTGACTGTGTTAGGAGGATTTTCATGGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATTTTAAATCCGATGACTTGCTATTAAAGCTTCAAACTAAAATAGTATCTCCCTCAGATGCCTGCAATTACATCATGCAATTTTTCAACTATGCGGAGAACATGGCAAACTATCCGGCTTCTGGTTATTCTTCAAAGGAATTGATAGTCTCTCAAGCCAACCTTCCAAAGGACACACTATCTCTTCCAAAAGCTAACTCTTCAATAACGAAATATACTTATGACCCGAGCTACTCGAGGCCACATTCCGCTGGCTCGTCAAAAGATCTTCATCAAAAGGACCTCAAAGCTTCCATCTTAAGCGAGCTAAAAAACGACGCTGATCTTCAATTGGCAGCTTTACTAAGAAAAGGTGGGATTGAAAATTTGGAGAGCGTTGTGCGGATAAAGGAGGCAGAAGCTAAAATGTTCCAAACTAAGGCAGATGAAGCGAGGAGGGAAGCAGAAGGGTTTCAGAAGATGGTCAGTTTAAAGACAGCTCAGATGGAAGATGAGTATACGACAAAGCTCTCGAAACTGAGTTTGCATGAGACCGAGGAAACACAGAGGAGGAAGTTGGATGACCTGAAAGTCGTGGAAAATTCCTACGTCGATTACTATAAAATGAAGAAGAGAATGCAAGATGAGATTGATGGTTTGTTGCAGAGAATGGAAGCAACAAAGCAGCAATGGATTTAA	2445	0.4147	MIANKDLRNGVADSDGESSRSKLSRPNFEPNKGYPDEKDVVFLKDSEMGGSGSGSGVGVGGSNNNSGMQELTLSYLCGSQKLSLGDKDVHGESFLKSLERMSQKGKEVMVSENSNQDGKWVERDFMSLSETREDSSKRSVEEEDVERERESVRDKKPKIETLNLSLALPDVSLSLTASNALHNNGDQQQQQLVRNKPSRPSTTVTTYSTEYTAPSLSYSYSHPFSHNPSCSITRNSTENFEFSMSKDDHIWNCGEGTNGSVHSRFKPIGDGAVSLSNHGGGTGISSFMQQGNNSQYKTTSSENHSFFPSELPARPRFEAHSGDSRGRNSENNRVFDGLDGGKMRNVSRPERIVREIVSESIPIVSLTIQEFTDEVVASTQEYLKNLIENKREELVSLQNRLERRSDLTKETLSKGNKVQLEILLAVKMGLSSFLYGNLQLSEMVEIFLYRRCRNVTCKSLLPVDDCDCKICSGNKGFCSSCMCPICLNFDCASNTCSWIGCDVCSHWCHAVCGLQRKLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFMCCAKDWGLETLLKELDCVRRIFMGSEDRKGKELHFKSDDLLLKLQTKIVSPSDACNYIMQFFNYAENMANYPASGYSSKELIVSQANLPKDTLSLPKANSSITKYTYDPSYSRPHSAGSSKDLHQKDLKASILSELKNDADLQLAALLRKGGIENLESVVRIKEAEAKMFQTKADEARREAEGFQKMVSLKTAQMEDEYTTKLSKLSLHETEETQRRKLDDLKVVENSYVDYYKMKKRMQDEIDGLLQRMEATKQQWI	814

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi5g04632	814	Coils	Coil	792	812	-	-
	Vivi5g04632	814	MobiDBLite	consensus disorder prediction	316	332	-	-
	Vivi5g04632	814	Coils	Coil	380	407	-	-
	Vivi5g04632	814	MobiDBLite	consensus disorder prediction	288	341	-	-
	Vivi5g04632	814	CDD	PHD_OBE1_like	482	541	IPR047578	-
	Vivi5g04632	814	MobiDBLite	consensus disorder prediction	1	65	-	-
	Vivi5g04632	814	Pfam	Coiled-coil region of Oberon	673	803	IPR032535	-
	Vivi5g04632	814	Pfam	PHD - plant homeodomain finger protein	452	576	IPR032881	-
	Vivi5g04632	814	MobiDBLite	consensus disorder prediction	288	307	-	-
	Vivi5g04632	814	Coils	Coil	709	736	-	-
	Vivi5g04632	814	MobiDBLite	consensus disorder prediction	184	206	-	-
	Vivi5g04632	814	MobiDBLite	consensus disorder prediction	126	154	-	-
	Vivi5g04632	814	PANTHER	VERNALIZATION-INSENSITIVE PROTEIN 3	92	813	IPR004082	-
	Vivi5g04632	814	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	443	464	IPR004082	-
	Vivi5g04632	814	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	562	581	IPR004082	-
	Vivi5g04632	814	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	710	730	IPR004082	-
	Vivi5g04632	814	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	749	771	IPR004082	-
	Vivi5g04632	814	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	367	389	IPR004082	-
	Vivi5g04632	814	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	489	509	IPR004082	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi5g04632	Vivi-Chr5	144921133	144924287	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi5g04632	452	549	PHD Gene Family	AT5G57380	30.612	3.59e-08	55.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi5g04632	-		-	gmx:100820216	1207.59