Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04629 ATGATGACTCCAAATTTAAACTTGGAACCTGAAAACCCTTCCGAAGCGCCTCAAGATCTTGATTCTATGACGCTTGACTTGACACTCAATATCAGTTCGAGTGAGGGCGAGTTTAAGGGTTCAAGTGATGCTAGCAGTGAAGTGGGAGCTGCTCATGCGTCGCCATCGGTAACTCCAAGGGTTTTCTCTTGTAATTACTGCAAAAGGAAATTCTTTAGCTCACAAGCGTTAGGAGGTCATCAGAACGCTCACAAAAGGGAGAGGACGATGGCTAAACGCGCGATGAGAATGGGAATGTTTACCGACAGGTATACAAGCCTAGCATCTCTACCTCTTCATGGTTCGCCTCTTCGGTCTCTTGGCGTTGAAGCTCATGGTGCAATGCATCAAAGAAGACATATGCAACCGTCATCATCAGTGGCGGCTCCTGATATGGGAGCTGCTGCGAAATTCAATAGAAACCATTTCGGATCGGTAGTTTTCGTGGAAGATGAGGATGTAAGTTTCTTTTGGCCTGGAAGTTTTAGACAGGTGGATCAGGGAGGTGGTGTTAATGTTGGAAATTCTAGTTTTGCTCCAATGGCTCCTCCTCCACCACAAGCATCTACATCTCCTGATCTCACTTTGAAGCTATAA 636 0.4591 MMTPNLNLEPENPSEAPQDLDSMTLDLTLNISSSEGEFKGSSDASSEVGAAHASPSVTPRVFSCNYCKRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFTDRYTSLASLPLHGSPLRSLGVEAHGAMHQRRHMQPSSSVAAPDMGAAAKFNRNHFGSVVFVEDEDVSFFWPGSFRQVDQGGGVNVGNSSFAPMAPPPPQASTSPDLTLKL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04629 211 MobiDBLite consensus disorder prediction 1 21 - -
Vivi5g04629 211 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 89 IPR013087 -
Vivi5g04629 211 MobiDBLite consensus disorder prediction 34 52 - -
Vivi5g04629 211 MobiDBLite consensus disorder prediction 186 211 - -
Vivi5g04629 211 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Vivi5g04629 211 FunFam Zinc finger protein 2 39 108 - -
Vivi5g04629 211 Gene3D Classic Zinc Finger 38 107 - -
Vivi5g04629 211 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 30 140 IPR044246 GO:0009788
Vivi5g04629 211 MobiDBLite consensus disorder prediction 34 54 - -
Vivi5g04629 211 SUPERFAMILY beta-beta-alpha zinc fingers 59 90 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04629 Vivi-Chr5 144853877 144855938 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04629 55 211 C2H2 Transcription Factor Family AT1G66140 44.086 5.41e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi5g04629 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04629 - - vvo:131602955 416.387