Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04627 ATGATTTGTTTCATTTCCTATTTTTCTTCTATGAGTTCTCCTGCACATGATGATCACATTCACATGATCACTTTCACCTCTTTGTTCTTGTTCATCTTGACATTTTTTCCAACAACAATTTGTCAACAACAACATAACAAACATGAAGATTGTCTCAAACCATACACATGTGGTGAAGTATCCAACATATACTATCCATTTTGGGGACAAAATAGACCAAGTTATTGTGGCATCAACAATGATCAATTCCACCTCAAATGTGAATCTCATCATCAAAACACATCCATTCAAATTGCTTCGCAAAATTTCCAAGTCTTGCATATTAATCAGTTCATTTACACCATGACAATGTTTCGAAAAGGCCTTGTTTATGATAATTGTTCTTCTGCTTTAACCAACACTTCTTTAAACTCGAGTCAGTTTCATTATATGTCTAATGTGAGGAACATTACTATTTTATATAACTGTCCTAATGACATCAAGCTTCCGAATGGCACGAGCATGAACTCGTTTTCGTGCAAGGAGGATTCGAGCAAGCGTGCTTTCTACGTGGATTCTGGAACAGCAGAAGGTGTGAAATGCGAAGGAGTTCGCATTGAAGTTCAGGTGACAAAGGAAGTGGAACTTGGTGGTGGAATTGAAGAGCTGAACAAGGCTTTGAGTGGAGGATTTGATGTGGAATATGTTGCAGATACTCAAAATTGCTTAAAATGTGTTTTAAGTAATGGAACTTGTGGAGAGAATGATATGTCTCAGTTTTCATGTTACTGTCCTGATGGAACTGAAGGTTTAGATTGTTCTCATCGCCGCGATAATAGATGGAATTGGAAAAGGAAGGTTGCTCTAGGAGTTTCTGCTGCTGCTGTTATCAGTGCAGTTTCTGTAGGCATTGCTATCTACATCTACTATTATTGCAGAAAGAAGAAAAAGAATTTTCATGCAGTATCATCTACTGCACTATCTCACTGTGTTTCTGGTTCTGGTTCAAATGTTACTGAAAAGGGAGGTAGATACTGTGGAGTCAACTTCTTCACCTATAATGAACTTGAAAAGGCCACAAACAACTTTGATTCTTCTAGAGCACTAGGAAATGGAGGCTTTGGGACAGTCTATTTTGGAAAACTCAGGGACGGGCGATTGATTGCGGTGAAGCGCATGTATGAGAACAACTTCAAAAGAGTTGAGCAATTTGTGAATGAAGTTGAGATTTTAACTGGTTTACACCATCAAAACCTAGTGTCATTGTACGGATGCACTTCGCGCCACAGTCGCGAACTGCTGCTTGTATATGAATATGTCCCTAATGGAACTGTTGCTGATCACCTTCATGGTTCAAAAGCAAAACCTGGCATGCTACCTTGGCCTGTCAGAATGAACATTGCAATAGAAACTGCTAGTGCATTGGTATATCTTCATGCATCTGACATCATCCATAGAGATGTGAAAACCAACAACATTCTACTAGACAATCATTTCAGTGTCAAAGTAGCCGATTTTGGACTTTCGCGTCTATTTCCAAATCATGTCACGCATATTTCAACCGCTCCACAAGGGACTCCTGGCTACGTGGATCCGGAATACCATTTGTACTATCAACTTACCGATAAAAGCGATGTATTTAGCTTCGGAGTTGTGTTGATTGAGTTGATATCATCCATGCCTGCTGTTGATATATCGCGTAACAAGCAAGACATCAATTTGTCTAACATGGCTATTAAGAAGATTCAAAATGGGACATTGAATGAGCTTGTTGACCCTACACTTGGTTTTGAATCAGATTTCAAGACAAGGAAAATGATCAATGCGGTCGCGGAGTTAGCATTTCAGTGTTTGCAGAGTTCTAAAGATGTTAGGCCTTCTATGGTAGAGGTGATGGAAAGGCTTAAGGATATTCAGAGTAATGGAACATATAATTATAAACCTGAGGTGTTGGATATCTCAAGAGAGGAAGATAGTGGTTTGGTCAAGAATGAACCACCACCATCATCACCAGATTCAAACATCAATACTTTTCCTTGA 2019 0.3903 MICFISYFSSMSSPAHDDHIHMITFTSLFLFILTFFPTTICQQQHNKHEDCLKPYTCGEVSNIYYPFWGQNRPSYCGINNDQFHLKCESHHQNTSIQIASQNFQVLHINQFIYTMTMFRKGLVYDNCSSALTNTSLNSSQFHYMSNVRNITILYNCPNDIKLPNGTSMNSFSCKEDSSKRAFYVDSGTAEGVKCEGVRIEVQVTKEVELGGGIEELNKALSGGFDVEYVADTQNCLKCVLSNGTCGENDMSQFSCYCPDGTEGLDCSHRRDNRWNWKRKVALGVSAAAVISAVSVGIAIYIYYYCRKKKKNFHAVSSTALSHCVSGSGSNVTEKGGRYCGVNFFTYNELEKATNNFDSSRALGNGGFGTVYFGKLRDGRLIAVKRMYENNFKRVEQFVNEVEILTGLHHQNLVSLYGCTSRHSRELLLVYEYVPNGTVADHLHGSKAKPGMLPWPVRMNIAIETASALVYLHASDIIHRDVKTNNILLDNHFSVKVADFGLSRLFPNHVTHISTAPQGTPGYVDPEYHLYYQLTDKSDVFSFGVVLIELISSMPAVDISRNKQDINLSNMAIKKIQNGTLNELVDPTLGFESDFKTRKMINAVAELAFQCLQSSKDVRPSMVEVMERLKDIQSNGTYNYKPEVLDISREEDSGLVKNEPPPSSPDSNINTFP 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04627 672 MobiDBLite consensus disorder prediction 648 672 - -
Vivi5g04627 672 ProSitePatterns EGF-like domain signature 1. 255 266 IPR000742 -
Vivi5g04627 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Vivi5g04627 672 CDD STKc_IRAK 362 631 - -
Vivi5g04627 672 Gene3D Phosphorylase Kinase; domain 1 330 432 - -
Vivi5g04627 672 ProSitePatterns Protein kinases ATP-binding region signature. 362 384 IPR017441 GO:0005524
Vivi5g04627 672 FunFam Wall-associated receptor kinase-like 20 433 640 - -
Vivi5g04627 672 SUPERFAMILY Protein kinase-like (PK-like) 338 645 IPR011009 -
Vivi5g04627 672 Pfam Wall-associated receptor kinase galacturonan-binding 51 116 IPR025287 GO:0030247
Vivi5g04627 672 ProSiteProfiles Protein kinase domain profile. 356 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04627 672 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 26 669 IPR044652 GO:0004672
Vivi5g04627 672 Pfam Wall-associated receptor kinase C-terminal 190 260 IPR032872 -
Vivi5g04627 672 Pfam Protein kinase domain 358 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04627 672 Gene3D Transferase(Phosphotransferase) domain 1 433 641 - -
Vivi5g04627 672 SMART serkin_6 356 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04627 Vivi-Chr5 144821524 144824799 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04627 42 666 Receptor kinase-like Gene Family AT1G25390 43.125 4.30e-150 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vivi5g04627 Pkinase 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04627 - - gmx:100794703 840.106