Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04624 ATGAGCGTGAAGAAGATGCCTTCAACAAAATATAAAAATTTTCAATTTCATAACTTTCAAGAGTTAGACCCTGTTTGGATAAGCAATTTAAGCGGAGTAAAACTTGTAGACAATGAGGTGGAGAAGTTGCTGACAGACAATGAGGTGGAGAAGTTGCTGACAATGGCGGATTTGGATGCTTCTTTCATGGATAAATCTGGCACTGACCTCTCTGTAGGTCAGGCTCAAAGAGTTGCACTTGCAAGTACTCTAGCTAACTCACCTGAGGTTTTGCTGTTGGATGAACCTACTAGTGCATTAGATCCGATATCGACAGAAAACATAGAAGATGCTTTGATGAAGTTGAACAAGAACAAAGGACTGCGACCTACTTTATATGGAAAAACCAGAGAAGCTCATAATAACAGACATTACTGTGCCACCGATAGTTATTCGACCTTCAGTCATAATTGA 453 0.3974 MSVKKMPSTKYKNFQFHNFQELDPVWISNLSGVKLVDNEVEKLLTDNEVEKLLTMADLDASFMDKSGTDLSVGQAQRVALASTLANSPEVLLLDEPTSALDPISTENIEDALMKLNKNKGLRPTLYGKTREAHNNRHYCATDSYSTFSHN 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04624 150 Gene3D - 6 122 IPR027417 -
Vivi5g04624 150 Pfam ABC transporter 47 98 IPR003439 GO:0005524
Vivi5g04624 150 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 118 IPR027417 -
Vivi5g04624 150 PANTHER ABC TRANSPORTER I FAMILY MEMBER 17 32 121 IPR005670 GO:0005315|GO:0016020|GO:0035435
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04624 Vivi-Chr5 144796230 144800127 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04624 61 112 Calmodulin-binding Proteins AT2G36910 44.231 1.98e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04624 K02068 - gmx:100791365 133.265