Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04620 ATGAGCAGCAGCCACCACAGCCGTAGGGACAAATCCCATACCTTTCTTCACAGTTTTCTCAAACACTTCAAATTCGGTTCCACTACAGAAGAAAACAATGAAGCTGAGATACAAAGAATGGCTTCACGAGAACAGAAGATATTTTCATATGAAACCCTTGTTTCTGCCACCAAAAATTTTAGTGCTAAGTTAGGTGAAGGAGGTTTTGGACCTGTCTACAAGGGGAAATTGAGTGATGGTAGAGAAATTGCTGTGAAGAAATTATCACAGACATCAAATCAAGGGAAGAAGGAGTTCATGAATGAGGCAAAGTTGTTAGCTCGTGTGCAACATAGGAATGTGGTGGATTTGTTGGGTTATTGTGTTCATGGCACAGAGAAGCTACTTGTTTATGAGTATCTTCCTCATGAAAGCCTTGACAAGTTTCTATTCAAACCTGATAAGAGAGAGCAGCTTGATTGGCAACGTAGGTTTGGAATAATCACTGGCGTGGCAAAGGGATTACTCTATCTCCACGAAGATGCGCACCAATGCATAATTCACCGTGACATCAAGGCCAGTAACGTATTGCTTGCTGACAAATGGACGCCCAAGATTGCTGATTTTGGTATGGCACGTCTCTTCCCCGAAGATCAAAGTCAAGTCAATACACGTGTGGCTGGAACAAATGGATATATGGCGCCGGAATATATGATGCACGGAAGACTCTCCGTCAAGGCGGACGTGTTTAGCTATGGAGTTTTGGTATTAGAGTTGATCACTGGCCAAAGAAACTCTTCCTTTAATTTGGATGTCGAGGAGCAGAATCTTTTCGATTGGGCTTACAAGATGTACAAGAAAGGAAAATGCTTAGAAATTGTAGATACTACATTAGTATCTACAGCTATAACCGAGCAAGTAGCTATGTGTATTCAACTAGCTCTTCTATGCATCCAAGGAGATCCACAACTTCGTCCAACAATGAGACGCGTTGTGGTGATGCTTTCAAGGAAATCACCACATACCCACATGGAAGAACCAACAAGACCAGGTATACCAGGTAGCAGATATAGAAGACCTCCGAGAAACTCTGGTTTATCTTCCACAATTGGTAGTACCTCTGGTGGTGTTTCGTATTCTCAGTCTTCTGATTCAAGTAAAAACGGTAGGAGTAGTACTAGCACGCTTTCAAGAACTGTCACTGGTACAAGTTCAGCTACTGCTGAGTTAGATACAAGAGGGAAACGTCCAATGAAGGATTAG 1242 0.4235 MSSSHHSRRDKSHTFLHSFLKHFKFGSTTEENNEAEIQRMASREQKIFSYETLVSATKNFSAKLGEGGFGPVYKGKLSDGREIAVKKLSQTSNQGKKEFMNEAKLLARVQHRNVVDLLGYCVHGTEKLLVYEYLPHESLDKFLFKPDKREQLDWQRRFGIITGVAKGLLYLHEDAHQCIIHRDIKASNVLLADKWTPKIADFGMARLFPEDQSQVNTRVAGTNGYMAPEYMMHGRLSVKADVFSYGVLVLELITGQRNSSFNLDVEEQNLFDWAYKMYKKGKCLEIVDTTLVSTAITEQVAMCIQLALLCIQGDPQLRPTMRRVVVMLSRKSPHTHMEEPTRPGIPGSRYRRPPRNSGLSSTIGSTSGGVSYSQSSDSSKNGRSSTSTLSRTVTGTSSATAELDTRGKRPMKD 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04620 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Vivi5g04620 413 FunFam Cysteine-rich receptor-like protein kinase 10 24 133 - -
Vivi5g04620 413 SMART serkin_6 58 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04620 413 MobiDBLite consensus disorder prediction 329 413 - -
Vivi5g04620 413 FunFam Cysteine-rich receptor-like protein kinase 2 134 336 - -
Vivi5g04620 413 MobiDBLite consensus disorder prediction 354 403 - -
Vivi5g04620 413 SUPERFAMILY Protein kinase-like (PK-like) 45 338 IPR011009 -
Vivi5g04620 413 ProSiteProfiles Protein kinase domain profile. 58 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04620 413 Pfam Protein tyrosine and serine/threonine kinase 60 327 IPR001245 GO:0004672|GO:0006468
Vivi5g04620 413 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 28 388 - -
Vivi5g04620 413 Gene3D Phosphorylase Kinase; domain 1 22 133 - -
Vivi5g04620 413 Gene3D Transferase(Phosphotransferase) domain 1 134 342 - -
Vivi5g04620 413 CDD STKc_IRAK 64 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04620 Vivi-Chr5 144717265 144720719 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04620 28 345 Receptor kinase-like Gene Family AT4G11530 51.242 6.48e-110 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi5g04620 PK_Tyr_Ser-Thr 4.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04620 - - vvo:131602949 741.11