Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04619 ATGAGCAGCAGCCACCACAGCCGTAGGGACAAATCCCATACCTTTCTTCACAGTTTTCTCAAACACTTCAAATTCGGTTCCACTACAGAAGAAAACAATGAAGCTGAGATACAAAGAATGGCTTCACGAGAACAGAAGATATTTTCATATGAAACCCTTGTTTCTGCCACCAAAAATTTTAGTGCTAAGTTAGGTGAAGGAGGTTTTGGACCTGTCTACAAGGGGAAATTGAGTGATGGTAGAGAAATTGCTGTGAAGAAATTATCACAGACATCAAATCAAGGGAAGAAGGAGTTCATGAATGAGGCAAAGTTGTTAGCTCGTGTGCAACATAGGAATGTGGTGGATTTGTTGGGTTATTGTGTTCATGGCACAGAGAAGCTACTTGTTTATGAGTATCTTCCTCATGAAAGCCTTGACAAGTTTCTATTCAAACCTGATAAGAGAGAGCAGCTTGATTGGCAACGTAGGTTTGGAATAATCACTGGCGTGGCAAAGGGATTACTCTATCTCCACGAAGATGCGCACCAATGCATAATTCACCGTGACATCAAGGCCAGTAACGTATTGCTTGCTGACAAATGGACGCCCAAGATTGCTGATTTTGGTATGGCACGTCTCTTCCCCGAAGATCAAAGTCAAGTCAATACACGTGTGGCTGGAACAAATGGATATATGGCGCCGGAATATATGATGCACGGAAGACTCTCCGTCAAGGCGGACGTGTTTAGCTATGGAGTTTTGGTATTAGAGTTGATCACTGGCCAAAGAAACTCTTCCTTTAATTTGGATGTCGAGGAGCAGAATCTTTTCGATTGGGCTTACAAGATGTACAAGAAAGGAAAATGCTTAGAAATTGTAGATACTACATTAGTATCTACAGCTATAACCGAGCAAGTAGCTATGTGTATTCAACTAGCTCTTCTATGCATCCAAGGAGATCCACAACTTCGTCCAACAATGAGACGCGTTGTGGTGATGCTTTCAAGGAAATCACCACATACCCACATGGAAGAACCAACAAGACCAGGTATACCAGGTAGCAGATATAGAAGACCTCCGAGAAACTCTGGTTTATCTTCCACAATTGGTAGTACCTCTGGTGGTGTTTCGTATTCTCAGTCTTCTGATTCAAGTAAAAACGGTACTCCCTCCGGTCTTATTTATAAGCAAAAGTTTTCAAGAAAATCTGACCTTAAGTATAAGCAAATGTCAACAAATCGAGGTGCATTAAATGCATCTATTCCAAAATTACCCTTGCATTAA 1266 0.4139 MSSSHHSRRDKSHTFLHSFLKHFKFGSTTEENNEAEIQRMASREQKIFSYETLVSATKNFSAKLGEGGFGPVYKGKLSDGREIAVKKLSQTSNQGKKEFMNEAKLLARVQHRNVVDLLGYCVHGTEKLLVYEYLPHESLDKFLFKPDKREQLDWQRRFGIITGVAKGLLYLHEDAHQCIIHRDIKASNVLLADKWTPKIADFGMARLFPEDQSQVNTRVAGTNGYMAPEYMMHGRLSVKADVFSYGVLVLELITGQRNSSFNLDVEEQNLFDWAYKMYKKGKCLEIVDTTLVSTAITEQVAMCIQLALLCIQGDPQLRPTMRRVVVMLSRKSPHTHMEEPTRPGIPGSRYRRPPRNSGLSSTIGSTSGGVSYSQSSDSSKNGTPSGLIYKQKFSRKSDLKYKQMSTNRGALNASIPKLPLH 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04619 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Vivi5g04619 421 FunFam Cysteine-rich receptor-like protein kinase 2 134 336 - -
Vivi5g04619 421 FunFam Cysteine-rich receptor-like protein kinase 10 24 133 - -
Vivi5g04619 421 Gene3D Phosphorylase Kinase; domain 1 22 133 - -
Vivi5g04619 421 MobiDBLite consensus disorder prediction 354 390 - -
Vivi5g04619 421 SMART serkin_6 58 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04619 421 ProSiteProfiles Protein kinase domain profile. 58 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04619 421 Pfam Protein tyrosine and serine/threonine kinase 60 327 IPR001245 GO:0004672|GO:0006468
Vivi5g04619 421 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 28 376 - -
Vivi5g04619 421 Gene3D Transferase(Phosphotransferase) domain 1 134 342 - -
Vivi5g04619 421 MobiDBLite consensus disorder prediction 329 421 - -
Vivi5g04619 421 SUPERFAMILY Protein kinase-like (PK-like) 45 338 IPR011009 -
Vivi5g04619 421 CDD STKc_IRAK 64 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04619 Vivi-Chr5 144717263 144720102 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04619 28 345 Receptor kinase-like Gene Family AT4G11530 51.242 1.52e-109 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi5g04619 PK_Tyr_Ser-Thr 5.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04619 - - vvo:131602949 818.15