Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04601 ATGGCTAGATCTCCCTGTTGTGAAAAACAACACACTAATAAAGGCGCTTGGTCCAAGGAAGAAGATGAACGGTTAATAAAATACATCAAAACTCACGGTGAAGGTTGTTGGCGTTCTCTTCCCAAAGCCGCTGGCTTGGCTCGTTGCGGAAAAAGTTGCAGACTTAGATGGATAAATTACCTCCGACCTGATCTTAAAAGAGGAAACTTCACTCGCGAAGAAGATGAACTTATCATTCGTCTCCACAACGAAGTTGGTAACAAATGGTCTCAAATTGCTCAACAATTGAAGGGAAGAACCGATAATGAGATAAAGAATTACTGGAATACACACATCAAGCGGAAACTCTACGGCCGTGGAGTTGATCCTTCAACACATAAACCACTCAAACCCGCCTCCGCTTCCGCCTCTGCCGCCGCGGGTGGTAGTACTTCCTCAACAACCACTGCATCTGCAATTGCTCTTCCAACAAATCTTATCAACAAACCGGCAGTTATTCCTGTGGTCCCCACAACCAGTGGCAGTAGCGTAAGCCACAAGAGCTTGAATACTAAAAGCGTGTTTCCGGTACTCAGTTTCAATGGCGGATTGAATAAAAAGTTAGTTGTAACTGATTCTGGTTACGGCGGTCTGGATAAAAAGTTAGTTGTAACTGATTCTGGTTACGGCGGTGTTGAGGATTCAGTTTCAAACAGTAGCAGTGGTGTAACCGTAGAGGAACCATCTCTACCTTATCCTCCTCAAATAAACTTGGAACTTTCACTGGCTCCACCATTTCAACAGCCACAAGCGTTGGCAGTGGCACCACAAGGTGTGTGTCTTTGTACACAAGCTATAGGGTTACATGGTAACGGTTCTTGTTGCTGCATGAATTCAAGGGCTATGATTGGTGTTTCTGCGGCGGCTCCACCTTCTGCAACCACGGGCACCGGCAACGATTTTTTTAGATTTTTCGGAGCCGGGTTTATCAAGTTTTGA 978 0.453 MARSPCCEKQHTNKGAWSKEEDERLIKYIKTHGEGCWRSLPKAAGLARCGKSCRLRWINYLRPDLKRGNFTREEDELIIRLHNEVGNKWSQIAQQLKGRTDNEIKNYWNTHIKRKLYGRGVDPSTHKPLKPASASASAAAGGSTSSTTTASAIALPTNLINKPAVIPVVPTTSGSSVSHKSLNTKSVFPVLSFNGGLNKKLVVTDSGYGGLDKKLVVTDSGYGGVEDSVSNSSSGVTVEEPSLPYPPQINLELSLAPPFQQPQALAVAPQGVCLCTQAIGLHGNGSCCCMNSRAMIGVSAAAPPSATTGTGNDFFRFFGAGFIKF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04601 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi5g04601 325 MobiDBLite consensus disorder prediction 119 146 - -
Vivi5g04601 325 CDD SANT 69 112 IPR001005 -
Vivi5g04601 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi5g04601 325 SMART sant 66 114 IPR001005 -
Vivi5g04601 325 SMART sant 13 63 IPR001005 -
Vivi5g04601 325 Gene3D - 68 138 - -
Vivi5g04601 325 CDD SANT 16 61 IPR001005 -
Vivi5g04601 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi5g04601 325 Gene3D - 14 66 - -
Vivi5g04601 325 FunFam MYB transcription factor 68 129 - -
Vivi5g04601 325 FunFam MYB-related transcription factor 13 66 - -
Vivi5g04601 325 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 148 - -
Vivi5g04601 325 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vivi5g04601 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi5g04601 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi5g04601 325 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04601 Vivi-Chr5 144494966 144496501 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04601 1 138 MYB Transcription Factor Family AT4G38620 78.261 5.67e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi5g04601 Myb_DNA-binding 7.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04601 K09422 - gmx:100808083 277.33