Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04598 ATGGAGAGGAAAACACTCAGCTTTTTGTTCTTGCTCTTCATTCTCTTAGCCGCTGATGTTTCGGTGAAGCCAGCAGAGGCGTTATTAGGCCGCTGTAAGGTTAAGAGCAGCAAGTTTAACGGACCATGCTTGACGGACACACACTGTTCAACGGTATGCAGGGGAGAAGGTTACAAAGGTGGTGATTGTCACGGCTTACGTCGCCGCTGTATGTGTCTTTGTTAG 225 0.4844 MERKTLSFLFLLFILLAADVSVKPAEALLGRCKVKSSKFNGPCLTDTHCSTVCRGEGYKGGDCHGLRRRCMCLC 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04598 74 CDD Knot1 41 72 IPR003614 GO:0006952
Vivi5g04598 74 PRINTS Purothionin signature 61 74 IPR008176 GO:0006952
Vivi5g04598 74 PRINTS Purothionin signature 31 46 IPR008176 GO:0006952
Vivi5g04598 74 Gene3D - 31 74 IPR036574 -
Vivi5g04598 74 PANTHER DEFENSIN-LIKE PROTEIN 1 6 74 - -
Vivi5g04598 74 ProSitePatterns Gamma-thionins family signature. 30 53 IPR008176 GO:0006952
Vivi5g04598 74 SUPERFAMILY Scorpion toxin-like 31 73 IPR036574 -
Vivi5g04598 74 SMART gth_4 31 74 IPR003614 GO:0006952
Vivi5g04598 74 Pfam Gamma-thionin family 32 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04598 Vivi-Chr5 144333329 144397699 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04598 7 72 Plant Defensins Gene Families AT1G61070 46.970 1.05e-16 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04598 - - cave:132166515 82.8037