Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04595 ATGGAGAGGTACGAGGTTGTTAAGGATTTGGGAGCTGGGAATTTTGGTGTGGCTAGGCTTTTGAGGAACAAGGAGACTAAGGAGCTTGTTGCCATGAAGTACATCGAGCGTGGTCACAAGATTGATGAGAATGTGGCAAGAGAGATTATCAACCACAGGTCTCTTCGGCATCCGAATATAATTCGCTTTAAGGAGGTGGTTTTGACTCCTACTCATTTAGCAATAGTGATGGAGTATGCAGCTGGAGGTGAACTCTTTGAGCGGATATGTAGTGCTGGACGGTTTAGCGAAGACGAGGCCAGGTATTTCTTTCAGCAGCTGATATCTGGTGTCCATTACTGTCATGCTATGCAAATATGTCATAGAGATTTGAAGCTGGAAAATACACTTTTAGATGGAAGCCCTGCACCTCGCTTGAAAATTTGTGACTTCGGCTATTCCAAGTCATCTTTGCTTCATTCCCGACCCAAATCAACTGTTGGAACTCCTGCTTATATAGCACCAGAGGTTCTTTCTAGGAGGGAGTATGATGGCAAGTTGGCTGATGTGTGGTCGTGCGGCGTAACCCTTTATGTCATGCTGGTTGGAGCATATCCCTTTGAGGATCAAGATGACCCGAGAAATTTTAGGAAAACAATTCAGCGCATAATGGCTGTTCAATACAAAATCCCTGATTATGTTCACATATCTCAAGATTGCAAACACCTTTTATCTCGTATATTTGTTGCAAATCCATTAAAGAGAATTTCTCTCCGGGAAATCAAGAACCATCCATGGTTTTTAAAGAATCTTCCAAGGGAGCTAACTGAATCAGCTCAAGCTGCGTACTACCAGAGAGGCAATCCAAGCTTTTCTATTCAAAGTGTGGACGAGATAATGAAAATTGTGGGAGAGGCGAGAGAACCTCCTCCGGTATCTAGGCCGGTCAAAGGCTTTGGCTGGGAAGGCGAGGAGGAGGAAGAAGAAGTGGAAGAAGAAGAAGTGGAGGAAGAGGAAGATGAAGAAGATGAGTATGACAAAAGGGTGAAAGAGGTTCATGCAAGTGGAGAGTTTCAAATCAGTTCAGAAGTGTAA 1074 0.4385 MERYEVVKDLGAGNFGVARLLRNKETKELVAMKYIERGHKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARYFFQQLISGVHYCHAMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMAVQYKIPDYVHISQDCKHLLSRIFVANPLKRISLREIKNHPWFLKNLPRELTESAQAAYYQRGNPSFSIQSVDEIMKIVGEAREPPPVSRPVKGFGWEGEEEEEEVEEEEVEEEEDEEDEYDKRVKEVHASGEFQISSEV 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04595 357 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04595 357 MobiDBLite consensus disorder prediction 303 357 - -
Vivi5g04595 357 Coils Coil 314 348 - -
Vivi5g04595 357 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04595 357 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vivi5g04595 357 MobiDBLite consensus disorder prediction 315 338 - -
Vivi5g04595 357 CDD STKc_SnRK2 3 259 - -
Vivi5g04595 357 PANTHER SERINE/THREONINE KINASE 2 317 - -
Vivi5g04595 357 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Vivi5g04595 357 FunFam Serine/threonine-protein kinase SRK2A 80 268 - -
Vivi5g04595 357 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Vivi5g04595 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Vivi5g04595 357 SUPERFAMILY Protein kinase-like (PK-like) 2 291 IPR011009 -
Vivi5g04595 357 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Vivi5g04595 357 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04595 Vivi-Chr5 144274091 144276609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04595 3 263 CBL-interacting serine-threonine protein kinases AT2G26980 41.912 3.15e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vivi5g04595 Pkinase 2.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04595 K14498 - gmx:547968 650.588