Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04587 ATGCCTCTTTTAAGGAAGAAGCCCTTTGCCTTGACTGAGCCTCCTCAAGATTTGAAGCCAGAGGAGCATGTTTACCAAGTTCGATTTACAAAAGAAATATTTCGGAATTATTCCGATTATTTGAGCCGTTTGAATCTATACCGCCAGAGGGTTTGGGCATGTAAAGTCACTGGAAAAACCGGCTTGACTTATGAAGAGGCTTTGGTGTCAGAACAACGAGCTACTGAAAAATTCCTACAATTTCCCAAAGAATTTATGACTCCTGCTTTAAAGATCATTCAGTACAGTATGGTTCCTTTGAAGGAACTTGCCGATTCTATTTATGAAAAACTGCAGGAACGTTTGTTTGTTGGTGCGGAACTATATGGGAAAAAAGATGACAATGTATGCCCATGCAGAATATTAAAAGTCATCCAGGAAGGAGTCAACAAATACCGTTATGAGGTAGCTTGGCTTGACAAAACCAAGAATGTAAGTGAAAAAACAGAAATCTGTGCAGAAGATTTGGTCCAAAAGAAGCCGCTTTTTAGTAGAAATATTCTAAAGTCCTTTATCCGAGAATCTACATACCGAAATGCCCCTTGGGTTTTACATGACAAACTGGCACAAAATCATGGCATCTCAACTGATGTTCCTGAGGAGTTAAGAGGAAAGGTTTTTCTCAAAGACGGACTTATAGTTTGCTCCAAGAAAAGAAATAATGAGGAATCAATGGAGGAAGCTGATAAGCGTAAGAAGAATAAGTTAGACAGGACACTAGTCAATGGTTCTGCACAAGAGAAAGAAAATGGAGAATGCAAGGAGATACCAATAAAATACCCCATTGATGATCTATTGGTGAAACCTAGTCCAGATGACCCTGTTTTCACTGACCGCCCTTCTCCGTCAAGAGACTTCAATGTTCCAGTTCATTGTGTAGGGGATCTCTTAATGGTTTGGGATTTTTGTACTTCTTTTGGTAAACAGTTAAACTTGTGGCCCTATTCTCTGGAAGATTTTGAAAATGCAATCTGCCATAAGGATAGCAATGTGGTTCTCCTTGTGGAATCTCATGCTGCACTTTTTCGAGTTCTCATCAAAGATGATGGTGAATACACTTCAGTGGTTGAGAAACGGAAGTTGAAGAAGATAACAATGGTTAACTGGAGAGAATATTTGTGTGATTTTCTAGAAATGATCAATATTCCTCGATTACGGAACTATGAAGCAATCATAAGGAGGGGACATTATGGCCTTGTAGATGCCAATGCTAAATTAGAGCTCTTATCCGAGTTGGTCAATCGAGTTATTGAAACTGCAGTTTTCAGGGAGAAGTTTGATAAGATTATGGAACAGCGGCATGAACTTGGGGCCTCTAAAAGGGAAGTAGCAATAGAACTTGGTAGAAAGAGAAGAGAAAAAAAAGAGAGGTTGAAAGCTGACTTAGAAAGCAATGGGCATCATTTAGTAGACAGTGCAGATATCCTAACAAACAATAATCACATTATGCAAAATGGACACATGGAAAAGAAAACAAATGGAGAGATAGAATCATCCAGGCAAGACAATTCACTGGGTAGTAGTGGGATTAAGCATTCAGGTCCTGCTTCAGAAAAGACTCCTAAAAATCTGGATTCAGAGCTGAAAGAACCACCAGAAAATGGAAAAGAAGTATTCAGAAAGAAATTATCAAAACAGTTGAAGGCGGTGGTTAAGGATTCATCAGAGAAGAATAGTATAGAGCGGAGGAGAGAATACTTTGAACGAGAGATGGAGAAACGAACTATTCGTAGAAGCCCATTAGGTAAAGACCGAGATTACAATAGGTATTGGTGGTTCCGCCGCGATGGAAGGATATTTGTTGAAAGCTGTGACTCTAAGGAGTGGGGATACTACAGCAGCAAGGAAGAGCTTGATGCATTGATGGGTTCACTGAATTGCAAGGGCGAGCGGGAAAGGGTGCTGCAAAAACAACTGGAAAAAAATTATACTAACATATGTTCAGAACTGCAGAAAAGATCGAAGGATTTGGCACAGAATATTGCCATAGACGAGGCTGTACTTCGAAGGTCTACTCGTGTTCGAGCTCCACCAAGGGAAAATCCTGCTCATGCTTTCCTCAAATATGTTAACAAGTGGAAAGATGAGTAA 2130 0.3986 MPLLRKKPFALTEPPQDLKPEEHVYQVRFTKEIFRNYSDYLSRLNLYRQRVWACKVTGKTGLTYEEALVSEQRATEKFLQFPKEFMTPALKIIQYSMVPLKELADSIYEKLQERLFVGAELYGKKDDNVCPCRILKVIQEGVNKYRYEVAWLDKTKNVSEKTEICAEDLVQKKPLFSRNILKSFIRESTYRNAPWVLHDKLAQNHGISTDVPEELRGKVFLKDGLIVCSKKRNNEESMEEADKRKKNKLDRTLVNGSAQEKENGECKEIPIKYPIDDLLVKPSPDDPVFTDRPSPSRDFNVPVHCVGDLLMVWDFCTSFGKQLNLWPYSLEDFENAICHKDSNVVLLVESHAALFRVLIKDDGEYTSVVEKRKLKKITMVNWREYLCDFLEMINIPRLRNYEAIIRRGHYGLVDANAKLELLSELVNRVIETAVFREKFDKIMEQRHELGASKREVAIELGRKRREKKERLKADLESNGHHLVDSADILTNNNHIMQNGHMEKKTNGEIESSRQDNSLGSSGIKHSGPASEKTPKNLDSELKEPPENGKEVFRKKLSKQLKAVVKDSSEKNSIERRREYFEREMEKRTIRRSPLGKDRDYNRYWWFRRDGRIFVESCDSKEWGYYSSKEELDALMGSLNCKGERERVLQKQLEKNYTNICSELQKRSKDLAQNIAIDEAVLRRSTRVRAPPRENPAHAFLKYVNKWKDE 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04587 709 ProSiteProfiles DDT domain profile. 303 364 IPR018501 -
Vivi5g04587 709 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 589 655 IPR028941 -
Vivi5g04587 709 MobiDBLite consensus disorder prediction 505 554 - -
Vivi5g04587 709 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Vivi5g04587 709 SMART testlast3 303 364 IPR018501 -
Vivi5g04587 709 Coils Coil 458 478 - -
Vivi5g04587 709 ProSiteProfiles WAC domain profile. 22 128 IPR013136 -
Vivi5g04587 709 MobiDBLite consensus disorder prediction 535 554 - -
Vivi5g04587 709 MobiDBLite consensus disorder prediction 511 527 - -
Vivi5g04587 709 Pfam DDT domain 304 361 IPR018501 -
Vivi5g04587 709 Coils Coil 231 251 - -
Vivi5g04587 709 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 707 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04587 305 361 Homeobox Transcription Factor Family AT1G28420 47.368 2.02e-08 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vivi5g04587 WAC_Acf1_DNA_bd 2.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04587 - - var:108323886 1013.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04587 5 144140554 144149085 Vivi5g04587 5 144140554 144149085 ECH