Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04572 ATGTTGTCCCTAAATTCTTCTAGCAAGGCTCATTTCAGAATATTGATGAGGTGGTTCATATTCCTTGTTGTCTTGAAACTTAGTTCTGCAATCAAAGATCCTGATATAGAAGGTGAAGCTCTGCTTGATCTTTTGAATTATCTCAATGATTCAAATAATCAAATAAAAGATTGGGATAGTCATTTAGTGAGCCCTTGTTTCAGTTGGTCGCATGTAACCTGTAGAAATGGACATGTCATATCTCTGACTCTGGCGTCAATTGGATTTTCTGGAACACTTTCTCCCTCGATTACCAGATTGGAATATTTGGTTAACTTAGAATTGCAGAACAACAATCTTTCGGGCCCTTTACCCGATTACATTGCCAACTTGACATACCTACAAAATCTAAATCTTGCTAACAATAATTTCAACGGTTCAATACCAGCTACATGGGCTCAACTATCTAATCTCAACAATGTGGATCTTTCGTCTAATGATCTTACCGGAACTATCCCAACACAACTCTTTTCGGTTCCGTTGTTTAACTTTTCGGATACACGCCTTGGTTGCGGCGGCTCTAGCTTCGAGCAGTCTTGTGTTTCTAAATCTGATCATCCAGATTCAACCGGCAAATCAAAATTGGCAAAAGTCGTGCGATATGCGAGTTGCGGTGCATTTGCACTTCTGATTCTTGGGGCCATTTTTACATATAGACACCATCAGAAGGACAAACACAAAAATGATGTCTTTGTAGATGTTTTAGGTGAAGATGAGACCAAAGTTTATTTTGGCCAATTAAGAAAGTTTTCATTGCGCGAACTCCAACTTGCGACTAAAAATTTCAGCGAAAGCTGTGTAATTGGCCAAGGTGGTTTTGGAAAAGTGTACAAAGGAATTCTCTCGGATAACACAAAAATCGCGGTGAAACGCCTCACTGATTATCATAATGCTGGTGGAGAGGCTGCATTTGAGAGAGAAGTTGATCTCATTAGTGTTGCAGTTCATAGAAACCTCCTAAGACTAATTGGATTTTTTTCGAGCTCGACGGAAAGAATCCTTGTATATCCTTTCATGGAAAATCTAAGTGTAGCGTATCAATTAAGAGATTTGAAATCCGATGAGAAAGGCTTAGATTGGCCAAAAAGAAAGCGTGTGGCTTTCGGTACTGCACACGGTTTGGAATATCTACACGAGCAATGCAATCCGAAGATAATTCACCGTGACCTAAAAGCTGCTAATATTCTTCTAGACGACGAGTTTGAACCTGTTCTTGGTGACTTCGGACTTGCCAAACTGGTTGATGCACGGATGACTCACGTTACCACTCAAGTGCGCGGTACAATGGGTCATATTGCCCCGGAATATTTGTCAACTGGAAAATCATCCGAGAAAACAGATGTTTTTGGATACGGCATAACACTTCTCGAACTTATCACTGGTCAGCGTGCTATTGACCTCTCTCGCCTCGAAGAAGAGGAGGACGTTCTTCTCATTGATCATGTAAAGAATCTATTACGAGAAAACAGGCTGGAGGACATAGTGGATAACAATTTGGACACATATGATCCAAAAGAAGTCGAAACCATTCTTCAAGTCGCATTACTTTGCACACAATGCTATCCAGAGGATCGCCCGACGATGTCCGAGGTCGTAAAAATGTTGCAGGGAGTCGGATTGGCAGATCGATGGGCGGACTGGAAACAACTCGAAGAGGCTAGAAATCAAGAAATAGAATTGTCACTCATGACTCATCAATTTCCTTGGAGTGATGAATCGACTCTTGATCAAGAAGCTATACAACTTTCAAGAGCAAGATAG 1800 0.4094 MLSLNSSSKAHFRILMRWFIFLVVLKLSSAIKDPDIEGEALLDLLNYLNDSNNQIKDWDSHLVSPCFSWSHVTCRNGHVISLTLASIGFSGTLSPSITRLEYLVNLELQNNNLSGPLPDYIANLTYLQNLNLANNNFNGSIPATWAQLSNLNNVDLSSNDLTGTIPTQLFSVPLFNFSDTRLGCGGSSFEQSCVSKSDHPDSTGKSKLAKVVRYASCGAFALLILGAIFTYRHHQKDKHKNDVFVDVLGEDETKVYFGQLRKFSLRELQLATKNFSESCVIGQGGFGKVYKGILSDNTKIAVKRLTDYHNAGGEAAFEREVDLISVAVHRNLLRLIGFFSSSTERILVYPFMENLSVAYQLRDLKSDEKGLDWPKRKRVAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEPVLGDFGLAKLVDARMTHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELITGQRAIDLSRLEEEEDVLLIDHVKNLLRENRLEDIVDNNLDTYDPKEVETILQVALLCTQCYPEDRPTMSEVVKMLQGVGLADRWADWKQLEEARNQEIELSLMTHQFPWSDESTLDQEAIQLSRAR 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04572 599 Pfam Protein kinase domain 278 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04572 599 SUPERFAMILY L domain-like 38 172 - -
Vivi5g04572 599 FunFam Somatic embryogenesis receptor-like kinase 1 352 568 - -
Vivi5g04572 599 ProSiteProfiles Protein kinase domain profile. 275 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04572 599 FunFam Nuclear pore complex protein NUP107 35 180 - -
Vivi5g04572 599 ProSitePatterns Protein kinases ATP-binding region signature. 281 303 IPR017441 GO:0005524
Vivi5g04572 599 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 18 558 - -
Vivi5g04572 599 Gene3D Phosphorylase Kinase; domain 1 244 351 - -
Vivi5g04572 599 FunFam Somatic embryogenesis receptor kinase 1 244 351 - -
Vivi5g04572 599 SUPERFAMILY Protein kinase-like (PK-like) 254 549 IPR011009 -
Vivi5g04572 599 Pfam Leucine rich repeat N-terminal domain 37 74 IPR013210 -
Vivi5g04572 599 SMART serkin_6 275 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04572 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 398 410 IPR008271 GO:0004672|GO:0006468
Vivi5g04572 599 Gene3D Ribonuclease Inhibitor 34 217 IPR032675 -
Vivi5g04572 599 Gene3D Transferase(Phosphotransferase) domain 1 352 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04572 Vivi-Chr5 143932768 143937009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04572 19 599 Receptor kinase-like Gene Family AT5G10290 53.783 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vivi5g04572 Pkinase 4.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04572 - - gmx:100799227 964.14