Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04550 ATGGGCAAGGAAAATGAGCCGGATATGAAAAAAGAAGTTGGGGATGATGGTTCCTCGCGTGTGGAGACTGGGGATTTAGAATCTCGTTCTCGAATTAGTCTGGAGAGGGAGATGGGATTGCCATGTTGTCGCGTGTGCCAGTGTGCTGAGTCTGATAAGCGAGGAGACGCTGCACTAGAGTTTTTGGGCATCACTCCGGTTATAGAAAGCAAGGGGGAAGTAAAGTCTGATGACCAGGGAATTCCAAAAGATACGCCTGGTAACCGAAATGTCAAAAGCAAATCCGGGACGATGGAATTTGTAGGCCCTGATGGGGAGGTTTTCATATGTAAGAATGATAGCGATTTGGAAAATGGTTTATCTCATGAAGATACGTTACTAGAACTTGGTTGTTCTTGTAAAAATGACATTGCTTTGGTACACTATGCTTGTGCACTCAAGTGGTTTATCAATCATGGATCTACCATTTGTGAAATATGTGGACATATAGCAAATAATATCAAAATATCTGACTTCAACAAGGTTGTTGGTTCTTTGAAAGAGTATGAAGCGTTGAGGGAAAGAACTGTCAACGGAGATCCTGGTCCTGCACAAGATCGTCCAAATACTACTGTGGATCCTGATGCCGTGGCTGCTATCCGTAGGCAACGGTTAAGTGAAATTGCACTATGGTTTTGTCCTCATAATAGCAGTAACTTTAACGATAATAGCAATGTGGGCTCAGTTTCACAGCTTGTTTCTCAGCAGCCTTTGAATATTTTTATCGAAGAGGCTGGCCCCGAACAGAACACTGCAACTAAGTGGGCCGTAGAAGGTACTGGGATCCTCCTTGCTACAGGGCTGCTTACCATCACCCTTGCATGGCTTATAGCTCCTCGTGTTGGGAAGAAAACTGCAAGAAGTGGTCTTCATATCCTACTTGGAGGTGTTTGTGCTTTAACGGTGGTGATTTTTTTCCGCTTCTTTGTGCTTACCAGAATCAAGTATGGACCTGCACGTTATTGGGCAATATTGTTTGTTTTCTGGTTTCTTGTCTTTGGAATATGGGCTTCTCGGACACACAGTGCCAATACAACATGA 1080 0.438 MGKENEPDMKKEVGDDGSSRVETGDLESRSRISLEREMGLPCCRVCQCAESDKRGDAALEFLGITPVIESKGEVKSDDQGIPKDTPGNRNVKSKSGTMEFVGPDGEVFICKNDSDLENGLSHEDTLLELGCSCKNDIALVHYACALKWFINHGSTICEICGHIANNIKISDFNKVVGSLKEYEALRERTVNGDPGPAQDRPNTTVDPDAVAAIRRQRLSEIALWFCPHNSSNFNDNSNVGSVSQLVSQQPLNIFIEEAGPEQNTATKWAVEGTGILLATGLLTITLAWLIAPRVGKKTARSGLHILLGGVCALTVVIFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHSANTT 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04550 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 172 IPR013083 -
Vivi5g04550 359 MobiDBLite consensus disorder prediction 72 96 - -
Vivi5g04550 359 SUPERFAMILY RING/U-box 123 163 - -
Vivi5g04550 359 Pfam RING-variant domain 118 160 IPR011016 GO:0008270
Vivi5g04550 359 PANTHER ZINC FINGER, RING-CH-TYPE 17 326 - -
Vivi5g04550 359 ProSiteProfiles Zinc finger RING-CH-type profile. 99 167 IPR011016 GO:0008270
Vivi5g04550 359 SMART ringv_2 109 161 IPR011016 GO:0008270
Vivi5g04550 359 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04550 Vivi-Chr5 143595949 143600117 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04550 1 349 C3H Transcription Factor Family AT5G08750 62.291 4.16e-150 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04550 - - gmx:100805323 524.628