Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04545 ATGCAAGGTGCATTAGAGTTACCTCCTGGGTTCAGATTTCACCCTACTGATGATGAGCTTGTGAATCATTATTTATGTAGAAAGTGTGCTTCTCTCCCAATTGCTGTTCCTATTATCAAAGAAATTGATTTGTATAAGTTTGATCCATGGCATCTTCCAGAAATGGCTCTTTACGGTGAGAAAGAGTGGTATTTTTTCTCTCCAAGGGACCGGAAATATCCAAACGGTTCACGACCGAACCGGGCGGCCGGAACCGGATACTGGAAAGCCACGGGAGCCGATAAGCCGATTGGAAAGCCGAAGCCGCTTGGAATTAAGAAAGCACTGGTTTTCTACGCTGGGAAAGCTCCTAAAGGTGTTAAAACTAATTGGATCATGCATGAATATCGGCTTGCAAACGTTGATAGATCCGCATCAAAAAATAACCACAATTTAAGACTAGATGATTGGGTGTTGTGTCGAATATACAACAAGAAAGGGAAGATTGAGAAATACAATGACGATACAAAAGCATCATCAATGTTTTCTGAGGAAGTTCAATTTGAGAATGAGACGAAGCCTAAGATCGAAACGAACGGTCACGATGATTTCAGGATTGTTAACGAGCAGTTATATACTGACACGTCAGATTCGGTGCCACGCTTTCACACGGATTCAAGCTGTTCTGAGCACGTGGTTTCGCCGGATGTCACGTGCGATAAGGAGGTTCAAAGTGAGCCGAAATGGAACGAATTTGTTCTTGGGCCTGATCCAGTGTCGGCCTTTGATTTTCAGTTGAATTTTATGGATGATGGGGAAGATGACCCTTTTGCCCCTCAGGTTCAGTATCAAATGAATCAACTTTCGGGTTGGCAAGATGTGTTTACGTACCTACCAAAGTAA 882 0.4308 MQGALELPPGFRFHPTDDELVNHYLCRKCASLPIAVPIIKEIDLYKFDPWHLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKPLGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSASKNNHNLRLDDWVLCRIYNKKGKIEKYNDDTKASSMFSEEVQFENETKPKIETNGHDDFRIVNEQLYTDTSDSVPRFHTDSSCSEHVVSPDVTCDKEVQSEPKWNEFVLGPDPVSAFDFQLNFMDDGEDDPFAPQVQYQMNQLSGWQDVFTYLPK 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04545 293 Gene3D NAC domain 16 163 IPR036093 GO:0003677|GO:0006355
Vivi5g04545 293 PANTHER NAC TRANSCRIPTION FACTOR 56 7 206 - -
Vivi5g04545 293 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Vivi5g04545 293 SUPERFAMILY NAC domain 3 158 IPR036093 GO:0003677|GO:0006355
Vivi5g04545 293 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
Vivi5g04545 293 FunFam NAC transcription factor 16 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04545 Vivi-Chr5 143577469 143579171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04545 1 293 NAC Transcription Factor Family AT1G01720 62.838 8.56e-123 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi5g04545 NAM 1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04545 - - gmx:100170751 489.96