Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04527 ATGGCGAACAAGAGCGTCAGAAAACCTCAGAGTCTCAACGATAGTCACTATCGCTTCCTTCAGGATTTCTCGGCTCCTCCCAAACCTCTCAACAATGATGAATACGATACTCCGATTCAACCTCGAAGCCTCATGTATCATGACGATGATACTATTCCGCAGTTTTCTGCTATCACTGACTTCGATTCTCCAATCGATCAAAATTCTCCGGAGAATAATCAACCTGTTTATGTAGAAGAAGCTCATCTACCTAACGAGTTTCCGCAGTTTTTTGATGATTGTACTCTTAGTCAAAATTATTCGGAGAATCACCAACAAGCTAATGATCTAAAGGAAGCTCCTATTCCTAACAAGGTTCCGCAGTTTTTCAATGATTGTTCTCTTGGTCAAAATTACACGGAGAAATGCCAATCAGTTAATGTAGAAGAAGCTCTTCTTCAAAAGGAGGTTCCACAAGGTCAAAATCATCCGGAGAAATGCCAACCAGTTAATGTAGAAGAAACTCTTCTTCCAAAGGTGGTTCCACAGAGTTTGGATGGTCATACTCCTAGTCAAAAATATTTGGAGAATAGCCAACCGGTTAAGGTAGAAAGAGCTCTTCTTCCCAAGAAGGTTCCACAGGATTTGGATGATTATTCTCTTAGTCCAAATTCTTTAGAGAATAGCCAACCAGTTAATGTTGAAAAAGCTCCCCTTCTTAACAAGGTTCCACATAGCTTCGTCAGTTCTTCTCTTGAGGAGGAAAAGAAGACTAAGGTTAAGGTGCAAGGGCGACGCCGTCTTTGCAAGGTTGCGGATACAGTTGCTAGCAAAAATGTGGCAGTTGATGATTCTAAGTTCGATGATCTTGTGGACTTTGATTCGCCTATTCCGGTGCGAAAAAATGTGATTGAGATTGAGGAGAGTAGGGGTAAGAGTGATATTAGGGATATTTTGTATGAGCTTAGCTCCAAGTTTGATGCACTATCAGTTGAAAAGAAGCCCAAGCCTGCTGAGCGTTTTGTCGGAGGGAAAAAAATTCTTGAAGATAAGGGTTTTGAATTTGCGAGTGCTGGATCTTCATTTTCTCTTAAACAGGAGCCCCGTGATTTCTCATCAAAGAATACTAAGAATGATATTAATGATGTTGAGTATGAGTCAGATGATTCGGTTCAGGTGTTGGACCTTGAGCCTGAGAATGATGGTTCTATTACATTGAATGACCCAAGGTCGACATATAAGTTGCAGCCTAAGATTGCAAAGATGTTGTATCCACATCAGCGGGAAGGATTGAAGTGGCTCTGGTCATTGCATGTTCGGGGTAAAGGTGGAATTTTGGGAGATGACATGGGTTTGGGAAAAACTATGCAGATTTGTGGCTTTATAGCTGGGCTGTTTCATTCCCGTTTAATTAGAAGGGTGTTGGTTGTGGCCCCCAAAACACTATTGCCACATTGGATCAAAGAGTTGACGGTTGTTGGTCTATCTGAGAAAACAAAAGAATATTTTGGAACTTGTGCAAAAGCCAGAGAATATGAACTTCAGTACATACTTCAGAACAGAGGTGTTCTTCTCACCACATATGATATCGTCCGCAACAATACCAAGTCCTTACAGGGGCATAGGTATTTGAACAACGAGGATAATGAAGATGAACCTACGTGGGACTACATGATACTTGATGAGGGGCACCTTATAAAGAACCCGAACACTCAGAGAGCTAAAAGTTTGCTTGAGATACCCAGTGCTCATCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTCAAGGAGCTGTGGGCATTGTTCAATTTCTGCTGCCCTGAGTTGCTTGGTGACAAGAAATGGTTCAAAGATAAATATGAAACACCTATACTTCGTGGAAATGATAAAAATGCCTCTGACAGAGAGAAGCGTACTGGTTCATCTATAGCAAAGGAGCTAAGGGAGCATATTCAGCCTTACTTTTTGAGACGTTTGAAGAGTGAGGTTTTCAATCAAGATACTGAAAAAACAACAGCAAAACTTTCTCAGAAACAAGAAATCATTGTGTGGCTTCGATTGTCCAATATTCAGCGGCATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTCGATGGTTCACCGCTGGCTGCCCTTACGATTTTGAAGAAAATATGTGATCATCCACTTCTATTGACAAAACGGGCAGCTGAGGATGTATTGGAAGGGTTGGACTCAATGCTTAAGCCAGATGAGGTTAGTGTTGCTGAGAAATTGGCGATGCATATAGCAGATGTTGCCGAAACAGATAAATTTAAAGATGAGCATGATGTATCATGCAAAATATCTTTCATCATGTCATTATTGGATAATTTGATCCCTGAAGGCCATAGGGTGCTTATTTTTTCTCAGACTCGCAAGATGCTTAATCTTATCCAGGAATGCATAACATCCAAAGGTTATGACTATTTACGAATTGATGGCACAACAAAATCCAGTGACAGAATAAAAGTTGTTGATGATTTCCAAGATGGTGTTGGAGCCCCAATATTTCTGTTGACATCTCAGGTTGGCGGTTTAGGACTTACGCTTACAAGAGCAGATCGTGTGATTGTTGTTGATCCTGCTTGGAACCCAAGTACTGATAATCAAAGTGTTGACCGGGCATATCGTATTGGTCAAAAGAAAGATGTTATTGTGTATAGACTGATGACATGCGGAACTGTTGAAGAAAAGATCTACAGGAAGCAGGTGTATAAAGGAGGATTATTCAAAACAGTTTCTGAACAGAAAGAACAAACTCGGTACTTTAGCCAGCAGGATCTTAGGGAGCTTTTCAGCCTTCCAAAAGAAGGATTTGATGTGTCTGTTACCCAACGGCAATTGGATGAGAAACATGATTGTAGACATATAGTGGATGCCTCTTTCCATGCACACATAGAGTTTTTGAAACGTCAGGGCATTGCTGGAATTAGTCATCACAGTTTACTATTTTCCAAGTCAGAGCCAGTTCAAGATGCTCCTGAGAATGAAGTAACAAGGATTCATAATACTAAATATTTTGGAACATCATCATCATCTTCACGTGAGCAAATTGTTGACGGAGCTGAGTTTGCTTTTAATCCCAAAGATGTTAATTTACACAAAAAAGACATTTCTCCAAGTAGTGTTGGTAAATTGACTGAGTTAGAAATCAAGGATAGAATTGTTCGACTCTCCCAAATGCTCTCTAATACGGCAATGGTTTCTAAATTACCTGACAAAGGAGAAAAACTACGGAAAAGGATTACAGAGTTGAATCGAGCTCTTACTAAGCTGAAGATGGAACAAACAAACGTAGTTGATTTGGATGATATTACAGATGAATTTGAAAGGGTGGTGAATGTATAA 3366 0.4011 MANKSVRKPQSLNDSHYRFLQDFSAPPKPLNNDEYDTPIQPRSLMYHDDDTIPQFSAITDFDSPIDQNSPENNQPVYVEEAHLPNEFPQFFDDCTLSQNYSENHQQANDLKEAPIPNKVPQFFNDCSLGQNYTEKCQSVNVEEALLQKEVPQGQNHPEKCQPVNVEETLLPKVVPQSLDGHTPSQKYLENSQPVKVERALLPKKVPQDLDDYSLSPNSLENSQPVNVEKAPLLNKVPHSFVSSSLEEEKKTKVKVQGRRRLCKVADTVASKNVAVDDSKFDDLVDFDSPIPVRKNVIEIEESRGKSDIRDILYELSSKFDALSVEKKPKPAERFVGGKKILEDKGFEFASAGSSFSLKQEPRDFSSKNTKNDINDVEYESDDSVQVLDLEPENDGSITLNDPRSTYKLQPKIAKMLYPHQREGLKWLWSLHVRGKGGILGDDMGLGKTMQICGFIAGLFHSRLIRRVLVVAPKTLLPHWIKELTVVGLSEKTKEYFGTCAKAREYELQYILQNRGVLLTTYDIVRNNTKSLQGHRYLNNEDNEDEPTWDYMILDEGHLIKNPNTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDKKWFKDKYETPILRGNDKNASDREKRTGSSIAKELREHIQPYFLRRLKSEVFNQDTEKTTAKLSQKQEIIVWLRLSNIQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGLDSMLKPDEVSVAEKLAMHIADVAETDKFKDEHDVSCKISFIMSLLDNLIPEGHRVLIFSQTRKMLNLIQECITSKGYDYLRIDGTTKSSDRIKVVDDFQDGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTVSEQKEQTRYFSQQDLRELFSLPKEGFDVSVTQRQLDEKHDCRHIVDASFHAHIEFLKRQGIAGISHHSLLFSKSEPVQDAPENEVTRIHNTKYFGTSSSSSREQIVDGAEFAFNPKDVNLHKKDISPSSVGKLTELEIKDRIVRLSQMLSNTAMVSKLPDKGEKLRKRITELNRALTKLKMEQTNVVDLDDITDEFERVVNV 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04527 1121 MobiDBLite consensus disorder prediction 1 42 - -
Vivi5g04527 1121 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 669 946 IPR027417 -
Vivi5g04527 1121 CDD SF2_C_SNF 765 896 - -
Vivi5g04527 1121 Gene3D - 672 971 IPR027417 -
Vivi5g04527 1121 CDD DEXHc_ERCC6L 416 653 - -
Vivi5g04527 1121 SMART ultradead3 411 611 IPR014001 -
Vivi5g04527 1121 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 428 603 IPR014001 -
Vivi5g04527 1121 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 404 653 IPR027417 -
Vivi5g04527 1121 Pfam SNF2-related domain 433 723 IPR000330 GO:0005524|GO:0140658
Vivi5g04527 1121 Coils Coil 1081 1101 - -
Vivi5g04527 1121 Gene3D - 390 652 IPR038718 -
Vivi5g04527 1121 PANTHER SNF2/RAD54 FAMILY MEMBER 247 1059 - -
Vivi5g04527 1121 MobiDBLite consensus disorder prediction 1 18 - -
Vivi5g04527 1121 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 776 935 IPR001650 -
Vivi5g04527 1121 FunFam Protein CHROMATIN REMODELING 24 395 673 - -
Vivi5g04527 1121 Pfam Helicase conserved C-terminal domain 773 885 IPR001650 -
Vivi5g04527 1121 SMART helicmild6 802 885 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04527 Vivi-Chr5 143436712 143447143 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04527 416 939 RAD5 or RAD16-like Gene Family AT1G02670 24.113 1.04e-33 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi5g04527 SNF2_N 5.1e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04527 K20093 - gmx:100779283 1385.16