Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04525 ATGAAGAAGAATTTGAACCTGGAACTTCGCCTCGTCCCACCTTCCATTAATTCCGATCTTCCTACCTCAATGGAAGGTGAAGCAGAAGAGCAGCAGCAGCACAGGCCTTTGACCATTGTCTACGATGGCAAGATTTTCGTTCGTGATGCAACAGAGATTCAGGCCAGGTCTATTTTAATGCTTGCAAAAAAAGAAATGGAGGATAAAGTGAGGACACCAACTGGATCATCATCAGAGCCATCTTCACCAGCAGTATTTACCAGTAACTTGTATAGCCCTGGAACTTCACTTTCCATGAAAAAAACACTTCAAAGGTTTCTCCAGAAGAGGAAGAATCGGATCCAAGAAGCATCACCTTACCATTTTAATCAGCAGAAATAA 381 0.4252 MKKNLNLELRLVPPSINSDLPTSMEGEAEEQQQHRPLTIVYDGKIFVRDATEIQARSILMLAKKEMEDKVRTPTGSSSEPSSPAVFTSNLYSPGTSLSMKKTLQRFLQKRKNRIQEASPYHFNQQK 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04525 126 Pfam tify domain 32 62 IPR010399 -
Vivi5g04525 126 MobiDBLite consensus disorder prediction 67 91 - -
Vivi5g04525 126 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 19 121 IPR040390 -
Vivi5g04525 126 MobiDBLite consensus disorder prediction 73 91 - -
Vivi5g04525 126 Pfam Jas motif 100 120 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04525 Vivi-Chr5 143415646 143418328 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04525 1 121 Tify Gene Family AT1G30135 40.310 1.70e-23 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vivi5g04525 tify 8.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04525 - - gmx:100305565 149.058