Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04512 ATGGGCAAGGAAAATGAGCCGGATATGAAAAAAGAAGTTGGGGATGATGGTTCCTCGCGTGTGGAGACTGGGGATTTGGAGTCTCGTTCTCGAATTAGTATGGAGAGGGAGATGGGATTGCCATGTTGTCGCGTGTGCCAGTGTGCTGAGTCTGATAAGCGAGGTGACGCTGCGCTAGAGTTTTTGGGCATCACTCCGGTTATAGAAAGCAAGAGGGAAGTAAAGTCTGATGACCAGGGAATTCCAAAAGATACGCCTGGTAACCGAAATGTCAAAAGCAAATCTGGGACGATGGAATTTGTAGGCCCTGATGGGGAGGTTTTCATATGTAAGAATGATAGCGATTTGGAAAATGGTTTATCTCATGAAGATACGTTACTAGAACTTGGTTGTTCTTGTAAAAATGACATTGCTTTGGTACACTATGCTTGTGCACTCAAGTGGTTTATCAATCATGGATCTACCATTTGTGAAATATGTGGACATATAGCAAATAATATCAAAATATCTGACTTCAACAAGGTTGTTGGTTCTTTGAAAGAGTATGAAGCGTTGAGGGAAAGAACTGTCAACGGAGATCCTGGTCCTGCACAAGATCGTCCAAATACTACTGTGGATCCTGATGCCGTGGCTGCTATCCGTAGGCAACGGTTAAGTGAAATTGCACTATGGTTTTGTCCTCATAATAGCAGTAACTTTAACGATAATAGCAATGCGGGCTCAGTTTCACAGCTTGTTTCTCAACAGCCTTTGAATATTTTTATTGAAGAAGCTGGCCCCGAACAGAACACTGCAACTAAATGGGCCGTAGAAGGTACTGGGATCCTCCTTGCTACAGGGCTTCTTACCATCACCCTTGCATGGCTTATAGCTCCTCGTGTTGGGAAGAAAACTGCAAGAAGTGGTCTTCATATCCTACTTGGAGGTGTTTGTGCTTTAACGGTGGTGATTTTTTTCCGCTTCTTTGTGCTTACCAGAATCAAGTATGGACCTGCACGTTATTGGGCAATATTGTTTGTTTTCTGGTTTCTTGTCTTTGGAATATGGGCTTCTCGGACACACAGTGCCAATACAACATGA 1080 0.4343 MGKENEPDMKKEVGDDGSSRVETGDLESRSRISMEREMGLPCCRVCQCAESDKRGDAALEFLGITPVIESKREVKSDDQGIPKDTPGNRNVKSKSGTMEFVGPDGEVFICKNDSDLENGLSHEDTLLELGCSCKNDIALVHYACALKWFINHGSTICEICGHIANNIKISDFNKVVGSLKEYEALRERTVNGDPGPAQDRPNTTVDPDAVAAIRRQRLSEIALWFCPHNSSNFNDNSNAGSVSQLVSQQPLNIFIEEAGPEQNTATKWAVEGTGILLATGLLTITLAWLIAPRVGKKTARSGLHILLGGVCALTVVIFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHSANTT 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04512 359 MobiDBLite consensus disorder prediction 72 96 - -
Vivi5g04512 359 MobiDBLite consensus disorder prediction 1 31 - -
Vivi5g04512 359 SUPERFAMILY RING/U-box 123 163 - -
Vivi5g04512 359 Pfam RING-variant domain 118 160 IPR011016 GO:0008270
Vivi5g04512 359 PANTHER ZINC FINGER, RING-CH-TYPE 17 326 - -
Vivi5g04512 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 172 IPR013083 -
Vivi5g04512 359 ProSiteProfiles Zinc finger RING-CH-type profile. 99 167 IPR011016 GO:0008270
Vivi5g04512 359 SMART ringv_2 109 161 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04512 Vivi-Chr5 143127744 143131995 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04512 1 349 C3H Transcription Factor Family AT5G08750 62.570 1.28e-151 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04512 - - gmx:100805323 519.235