Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04497 ATGGCGAACAAGAGCGTCAGAAAACCTCAGAGTCTCAACGATAGTCACTATCGCTTTCTTCAAGACTTCTCCGCTCCTCCCAAACCCCTCAACAATGATGAATACGATACTCCGATTCAACCTCGAAGCCTCATGTATCATGACGATGATACTATTCCGCAGTTTTCTGCTATCACTGACTTCGATTCACCAATCGATCAAAATTCTCCAGAGAATAATCAACCTGTTTATGTAGAAGAAGCTCATCTACCTAACGAGGTTCCACAGTTTTTAGATGATTGTTCTCTAAGTCAAAATTATTCCGAGAATCGCCAACAAGCTAAGGAAGATGAAGCTCCTATCCCTAACAAGGTTCCACAGTTTTTCGATGATTGCTCTCTTGATAACCAGCAACCAGATGATGCAGAAGAAGCTCTTCTTACAAAGGAGGTTCCACAGGGTTTGAATAATTATTCTCCTGGTCAAAATCATCCGGAGAAATGCCAACCAGTTAATGTAGAAGAAACTCTTCTTCCAAAGGTGGTTCCACAGAGTTTGGATGGTCATACTCCTAGTCAAAATTATTTGGAGAATAGCCAACCGGTTAAGGTAGAAAGAGCTCTTCTTCCCAAGAAGGTTCCACAGGATTTGGATGATTATTCTCTTAGTCCAAATTCTTTAGAGAATAGCCAACCAGTTAATGTTGAAAAAGCTCCTCTTCTTAACAAGGTTCCACATAGCTTCGTCAGTTCTTCTCTTGAGGAGGAAAAGAAGACTAAGGTTAAGGTGCAAGGGCGACGCCGTCTTTGCAAGGTTGCGGATACAGTTGCTAGCAAAAATGTGGCAGTTGATGATTCTAAGTTCGATGATCTTGTGGACTTTGATTCGCCTATTCCGGTGCGAAAAAATGTGATTGAGATTGAGGAGAGTAGGGGTAAGAGTGATATTAGGGATATTTTGTATGAGCTTAGCTCCAAGTTTGATGCACTATCAGTTGAAAAGAAGCCCAAGCCTGCTGAGCGTTTTGTCGGAGGGAAAAAAATTCTTGAAGATAAGGGTTTTGAATTTGCGAGTGCTGGATCTTCATTTTCTCTTAAACAGGAGCCCCGTGATTTCTCATCAAAGAATACTAAGAATGATATTAATGATGTTGAGTATGAGTCAGATGATTCGGTTCAGGTGTTGGACCTTGAGCCTGAGAATGATGGTTCTATTACATTGAATGACCCAAGGTCGACATATAAGTTGCAGCCTAAGATTGCAAAGATGTTGTATCCACATCAGCGGGAAGGATTGAAGTGGCTCTGGTCATTGCATGTTCGGGGTAAAGGTGGAATTTTGGGAGATGACATGGGTTTGGGAAAAACTATGCAGATTTGTGGCTTTATAGCTGGGCTGTTTCATTCCCGTTTAATTAGAAGGGTGTTGGTTGTGGCCCCCAAAACACTATTGCCACATTGGATCAAAGAGTTGACGGTTGTTGGTCTATCTGAGAAAACAAAAGAATATTTTGGAACTTGTGCAAAAGCCAGAGAATATGAACTTCAGTACATACTTCAGAACAGAGGTGTTCTTCTCACCACATATGATATCGTCCGCAACAATACCAAGTCCTTACAGGGGCATAGGTATTTGAACAACGAGGATAATGAAGATGACCCTACGTGGGACTACATGATACTTGATGAGGGGCACCTTATAAAGAACCCGAACACTCAGAGAGCTAAAAGTTTGCTTGAGATACCCAGTGCCCATCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTCAAGGAGCTGTGGGCATTGTTCAATTTCTGCTGCCCTGAGTTGCTTGGTGACAAGAAATGGTTCAAAGATAAATATGAAACACCTATACTTCGTGGAAATGATAAAAATGCCTCTGACAGAGAGAAGCGTACTGGTTCATCTATAGCAAAGGAGCTAAGGGATCATATTCAGCCTTACTTTTTGAGACGTTTGAAGAGTGAGGTTTTCAATCAAGATACTGAAAAAACAACAGCAAAACTTTCTCAGAAACAAGAAATCATTGTGTGGCTTCGATTGTCCAATATTCAGCGGCATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTCGATGGTTCACCGCTGGCTGCCCTTACGATTTTGAAGAAAATATGTGATCATCCACTTCTATTGACAAAACGGGCAGCTGAGGATGTATTGGAAGGGTTGGACTCAATGCTTAAGCCAGATGAGGTTAGTGTAGCTGAGAAATTGGCGATGCATATAGCAGATGTTGCAGAAACAGATAAATTTAAAGATGAGCATGATGTATCATGCAAAATATCTTTCATCATGTCATTATTGGATAATTTGATCCCTGAAGGCCATAGGGTGCTTATTTTTTCTCAGACTCGCAAGATGCTTAATCTTATCCAGGAATGCATAACATCCAAAGGTTATGACTATTTACGAATTGATGGCACAACAAAATCCAGTGACAGAATAAAAGTTGTTGATGATTTCCAAGATGGTGTTGGAGCCCCAATATTTCTGTTGACATCTCAGGTTGGCGGTTTAGGACTTACGCTTACAAGAGCAGATCGTGTGATTGTTGTTGATCCTGCTTGGAACCCAAGTACTGATAATCAAAGTGTTGACCGGGCATATCGTATTGGTCAAAAGAAAGATGTTATTGTGTATAGACTGATGACATGCGGAACTGTTGAAGAAAAGATCTACAGGAAGCAGGTATATAAAGGAGGATTATTCAAAACAGTTTCTGAACAGAAAGAACAAACTCGGTACTTTAGCCAGCAGGATCTTAGGGAGCTTTTCAGCCTTCCAAAAGAAGGATTTGATGTGTCTGTTACCCAACGGCAATTGGATGAGAAACATGATTGTAGACATATAGTGGATGCCTCTTTCCATGCACACATAGAGTTTTTGAAACGTCAGGGCATTGCTGGAATTAGTCATCACAGTTTACTATTTTCCAAGTCAGAGCCAGTTCAAGATGCTCCTGAGAATGAAGTAACAAGGATTCATAATACTAAATATTTTGGAACATCATCATCATCTTCACGTGAGCAAATTGTTGACGGAGCTGAGTTTGCTTTTAATCCCAAAGATGTTAATTTACACAAAAAAGACATTTCTCCAAGTAGTGTTGGTAAATTGACTGAGTTAGAAATCAAGGATAGAATTGTTCGACTCTCCCAAATGCTCTCTAATACGGCAATGGTTTCTAAATTACCTGACAAAGGAGAAAAACTACGGAAAAGGATTACAGAGTTGAATCGAGCTCTTACTAAGCTGAAGATGGAACAAACAAACGTAGTTGATTTGGATGATATTACAGATGAATTTGAAAGGGTGGTGAATGTATAA 3369 0.4019 MANKSVRKPQSLNDSHYRFLQDFSAPPKPLNNDEYDTPIQPRSLMYHDDDTIPQFSAITDFDSPIDQNSPENNQPVYVEEAHLPNEVPQFLDDCSLSQNYSENRQQAKEDEAPIPNKVPQFFDDCSLDNQQPDDAEEALLTKEVPQGLNNYSPGQNHPEKCQPVNVEETLLPKVVPQSLDGHTPSQNYLENSQPVKVERALLPKKVPQDLDDYSLSPNSLENSQPVNVEKAPLLNKVPHSFVSSSLEEEKKTKVKVQGRRRLCKVADTVASKNVAVDDSKFDDLVDFDSPIPVRKNVIEIEESRGKSDIRDILYELSSKFDALSVEKKPKPAERFVGGKKILEDKGFEFASAGSSFSLKQEPRDFSSKNTKNDINDVEYESDDSVQVLDLEPENDGSITLNDPRSTYKLQPKIAKMLYPHQREGLKWLWSLHVRGKGGILGDDMGLGKTMQICGFIAGLFHSRLIRRVLVVAPKTLLPHWIKELTVVGLSEKTKEYFGTCAKAREYELQYILQNRGVLLTTYDIVRNNTKSLQGHRYLNNEDNEDDPTWDYMILDEGHLIKNPNTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDKKWFKDKYETPILRGNDKNASDREKRTGSSIAKELRDHIQPYFLRRLKSEVFNQDTEKTTAKLSQKQEIIVWLRLSNIQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGLDSMLKPDEVSVAEKLAMHIADVAETDKFKDEHDVSCKISFIMSLLDNLIPEGHRVLIFSQTRKMLNLIQECITSKGYDYLRIDGTTKSSDRIKVVDDFQDGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTVSEQKEQTRYFSQQDLRELFSLPKEGFDVSVTQRQLDEKHDCRHIVDASFHAHIEFLKRQGIAGISHHSLLFSKSEPVQDAPENEVTRIHNTKYFGTSSSSSREQIVDGAEFAFNPKDVNLHKKDISPSSVGKLTELEIKDRIVRLSQMLSNTAMVSKLPDKGEKLRKRITELNRALTKLKMEQTNVVDLDDITDEFERVVNV 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04497 1122 Pfam SNF2-related domain 434 724 IPR000330 GO:0005524|GO:0140658
Vivi5g04497 1122 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 405 654 IPR027417 -
Vivi5g04497 1122 PANTHER SNF2/RAD54 FAMILY MEMBER 248 1060 - -
Vivi5g04497 1122 Gene3D - 673 972 IPR027417 -
Vivi5g04497 1122 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 777 936 IPR001650 -
Vivi5g04497 1122 SMART ultradead3 412 612 IPR014001 -
Vivi5g04497 1122 SMART helicmild6 803 886 IPR001650 -
Vivi5g04497 1122 Coils Coil 1082 1102 - -
Vivi5g04497 1122 Gene3D - 391 653 IPR038718 -
Vivi5g04497 1122 CDD SF2_C_SNF 766 897 - -
Vivi5g04497 1122 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 670 947 IPR027417 -
Vivi5g04497 1122 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 429 604 IPR014001 -
Vivi5g04497 1122 MobiDBLite consensus disorder prediction 21 41 - -
Vivi5g04497 1122 Pfam Helicase conserved C-terminal domain 774 886 IPR001650 -
Vivi5g04497 1122 FunFam Protein CHROMATIN REMODELING 24 396 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04497 Vivi-Chr5 143004990 143015383 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04497 417 940 RAD5 or RAD16-like Gene Family AT1G02670 24.113 1.14e-33 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi5g04497 SNF2_N 7.2e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04497 K20093 - gmx:100779283 1389.79