Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04496 ATGGCGAACAAGAGCGTCAGAAAACCTCAGAGTCTCAACGATAGTCACTATCGCTTTCTTCAAGACTTCTCCGCTCCTCCCAAACCCCTCAACAATGATGAATACGATACTCCGATTCAACCTCGAAGCCTCATGTATCATGACGATGATACTATTCCGCAGTTTTCTGCTATCACTGACTTCGATTCACCAATCGATCAAAATTCTCCAGAGAATAATCAACCTGTTTATGTAGAAGAAGCTCATCTACCTAACGAGGTTCCACAGTTTTTAGATGATTGTTCTCTAAGTCAAAATTATTCCGAGAATCGCCAACAAGCTAAGGAAGATGAAGCTCCTATCCCTAACAAGGTTCCACAGTTTTTCGATGATTGCTCTCTTGGTCAAAATTTTGTAGATAACCAGCAACCAGATGATGCAGAAGAAGCTCTTCTTACAAAGGAGGTTCCACAGGGTTTGAATAATTATTCTCCTGGTCAAAATCATCCGGAGAAATGCCAACCAGTTAATGTAGAAGAAACTCTTCTTCCAAAGGTGGTTCCACAGAGTTTGGATGGTCATACTCCTAGTCAAAATTATTTGGAGAATAGCCAACCGGTTAAGGTAGAAAGAGCTCTTCTTCCCAAGAAGGTTCCACAGGATTTGGATGATTATTCTCTTAGTCCAAATTCTTTAGAGAATAGCCAACCAGTTAATGTTGAAAAAGCTCCTCTTCTTAACAAGGTTCCACATAGCTTCGTCAGTTCTTCTCTTGAGGAGGAAAAGAAGACTAAGGTTAAGGTGCAAGGGCGACGCCGTCTTTGCAAGGTTGCGGATACAGTTGCTAGCAAAAATGTGGCAGTTGATGATTCTAAGTTCGATGATCTTGTGGACTTTGATTCGCCTATTCCGGTGCGAAAAAATGTGATTGAGATTGAGGAGAGTAGGGGTAAGAGTGATATTAGGGATATTTTGTATGAGCTTAGCTCCAAGTTTGATGCACTATCAGTTGAAAAGAAGCCCAAGCCTGCTGAGCGTTTTGTCGGAGGGAAAAAAATTCTTGAAGATAAGGGTTTTGAATTTGCGAGTGCTGGATCTTCATTTTCTCTTAAACAGGAGCCCCGTGATTTCTCATCAAAGAATACTAAGAATGATATTAATGATGTTGAGTATGAGTCAGATGATTCGGTTCAGGTGTTGGACCTTGAGCCTGAGAATGATGGTTCTATTACATTGAATGACCCAAGGTCGACATATAAGTTGCAGCCTAAGATTGCAAAGATGTTGTATCCACATCAGCGGGAAGGATTGAAGTGGCTCTGGTCATTGCATGTTCGGGGTAAAGGTGGAATTTTGGGAGATGACATGGGTTTGGGAAAAACTATGCAGATTTGTGGCTTTATAGCTGGGCTGTTTCATTCCCGTTTAATTAGAAGGGTGTTGGTTGTGGCCCCCAAAACACTATTGCCACATTGGATCAAAGAGTTGACGGTTGTTGGTCTATCTGAGAAAACAAAAGAATATTTTGGAACTTGTGCAAAAGCCAGAGAATATGAACTTCAGTACATACTTCAGAACAGAGGTGTTCTTCTCACCACATATGATATCGTCCGCAACAATACCAAGTCCTTACAGGGGCATAGGTATTTGAACAACGAGGATAATGAAGATGACCCTACGTGGGACTACATGATACTTGATGAGGGGCACCTTATAAAGAACCCGAACACTCAGAGAGCTAAAAGTTTGCTTGAGATACCCAGTGCCCATCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTCAAGGAGCTGTGGGCATTGTTCAATTTCTGCTGCCCTGAGTTGCTTGGTGACAAGAAATGGTTCAAAGATAAATATGAAACACCTATACTTCGTGGAAATGATAAAAATGCCTCTGACAGAGAGAAGCGTACTGGTTCATCTATAGCAAAGGAGCTAAGGGATCATATTCAGCCTTACTTTTTGAGACGTTTGAAGAGTGAGGTTTTCAATCAAGATACTGAAAAAACAACAGCAAAACTTTCTCAGAAACAAGAAATCATTGTGTGGCTTCGATTGTCCAATATTCAGCGGCATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTCGATGGTTCACCGCTGGCTGCCCTTACGATTTTGAAGAAAATATGTGATCATCCACTTCTATTGACAAAACGGGCAGCTGAGGATGTATTGGAAGGGTTGGACTCAATGCTTAAGCCAGATGAGGTTAGTGTAGCTGAGAAATTGGCGATGCATATAGCAGATGTTGCAGAAACAGATAAATTTAAAGATGAGCATGATGTATCATGCAAAATATCTTTCATCATGTCATTATTGGATAATTTGATCCCTGAAGGCCATAGGGTGCTTATTTTTTCTCAGACTCGCAAGATGCTTAATCTTATCCAGGAATGCATAACATCCAAAGGTTATGACTATTTACGAATTGATGGCACAACAAAATCCAGTGACAGAATAAAAGTTGTTGATGATTTCCAAGATGGTGTTGGAGCCCCAATATTTCTGTTGACATCTCAGGTTGGCGGTTTAGGACTTACGCTTACAAGAGCAGATCGTGTGATTGTTGTTGATCCTGCTTGGAACCCAAGTACTGATAATCAAAGTGTTGACCGGGCATATCGTATTGGTCAAAAGAAAGATGTTATTGTGTATAGACTGATGACATGCGGAACTGTTGAAGAAAAGATCTACAGGAAGCAGGTATATAAAGGAGGATTATTCAAAACAGTTTCTGAACAGAAAGAACAAACTCGGTACTTTAGCCAGCAGGATCTTAGGGAGCTTTTCAGCCTTCCAAAAGAAGGATTTGATGTGTCTGTTACCCAACGGCAATTGGATGAGAAACATGATTGTAGACATATAGTGGATGCCTCTTTCCATGCACACATAGAGTTTTTGAAACGTCAGGGCATTGCTGGAATTAGTCATCACAGTTTACTATTTTCCAAGTCAGAGCCAGTTCAAGATGCTCCTGAGAATGAAGTAACAAGGATTCATAATACTAAATATTTTGGAACATCATCATCATCTTCACGTGAGCAAATTGTTGACGGAGCTGAGTTTGCTTTTAATCCCAAAGATGTTAATTTACACAAAAAAGACATTTCTCCAAGTAGTGTTGGTAAATTGACTGAGTTAGAAATCAAGGATAGAATTGTTCGACTCTCCCAAATGCTCTCTAATACGGCAATGGTTTCTAAATTACCTGACAAAGGAGAAAAACTACGGAAAAGGATTACAGAGTTGAATCGAGCTCTTACTAAGCTGAAGATGGAACAAACAAACGTAGTTGATTTGGATGATATTACAGATGAATTTGAAAGGGTGGTGAATGTATAA 3384 0.4013 MANKSVRKPQSLNDSHYRFLQDFSAPPKPLNNDEYDTPIQPRSLMYHDDDTIPQFSAITDFDSPIDQNSPENNQPVYVEEAHLPNEVPQFLDDCSLSQNYSENRQQAKEDEAPIPNKVPQFFDDCSLGQNFVDNQQPDDAEEALLTKEVPQGLNNYSPGQNHPEKCQPVNVEETLLPKVVPQSLDGHTPSQNYLENSQPVKVERALLPKKVPQDLDDYSLSPNSLENSQPVNVEKAPLLNKVPHSFVSSSLEEEKKTKVKVQGRRRLCKVADTVASKNVAVDDSKFDDLVDFDSPIPVRKNVIEIEESRGKSDIRDILYELSSKFDALSVEKKPKPAERFVGGKKILEDKGFEFASAGSSFSLKQEPRDFSSKNTKNDINDVEYESDDSVQVLDLEPENDGSITLNDPRSTYKLQPKIAKMLYPHQREGLKWLWSLHVRGKGGILGDDMGLGKTMQICGFIAGLFHSRLIRRVLVVAPKTLLPHWIKELTVVGLSEKTKEYFGTCAKAREYELQYILQNRGVLLTTYDIVRNNTKSLQGHRYLNNEDNEDDPTWDYMILDEGHLIKNPNTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDKKWFKDKYETPILRGNDKNASDREKRTGSSIAKELRDHIQPYFLRRLKSEVFNQDTEKTTAKLSQKQEIIVWLRLSNIQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGLDSMLKPDEVSVAEKLAMHIADVAETDKFKDEHDVSCKISFIMSLLDNLIPEGHRVLIFSQTRKMLNLIQECITSKGYDYLRIDGTTKSSDRIKVVDDFQDGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTVSEQKEQTRYFSQQDLRELFSLPKEGFDVSVTQRQLDEKHDCRHIVDASFHAHIEFLKRQGIAGISHHSLLFSKSEPVQDAPENEVTRIHNTKYFGTSSSSSREQIVDGAEFAFNPKDVNLHKKDISPSSVGKLTELEIKDRIVRLSQMLSNTAMVSKLPDKGEKLRKRITELNRALTKLKMEQTNVVDLDDITDEFERVVNV 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04496 1127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 675 952 IPR027417 -
Vivi5g04496 1127 Coils Coil 1087 1107 - -
Vivi5g04496 1127 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 434 609 IPR014001 -
Vivi5g04496 1127 MobiDBLite consensus disorder prediction 1 41 - -
Vivi5g04496 1127 FunFam Protein CHROMATIN REMODELING 24 401 679 - -
Vivi5g04496 1127 SMART helicmild6 808 891 IPR001650 -
Vivi5g04496 1127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 659 IPR027417 -
Vivi5g04496 1127 Gene3D - 396 658 IPR038718 -
Vivi5g04496 1127 SMART ultradead3 417 617 IPR014001 -
Vivi5g04496 1127 Pfam Helicase conserved C-terminal domain 779 891 IPR001650 -
Vivi5g04496 1127 PANTHER SNF2/RAD54 FAMILY MEMBER 253 1065 - -
Vivi5g04496 1127 CDD SF2_C_SNF 771 902 - -
Vivi5g04496 1127 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 782 941 IPR001650 -
Vivi5g04496 1127 MobiDBLite consensus disorder prediction 1 18 - -
Vivi5g04496 1127 Gene3D - 678 977 IPR027417 -
Vivi5g04496 1127 Pfam SNF2-related domain 439 729 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04496 Vivi-Chr5 143004990 143015383 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04496 422 945 RAD5 or RAD16-like Gene Family AT1G02670 24.113 9.18e-34 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi5g04496 SNF2_N 7.2e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04496 K20093 - gmx:100779283 1388.24