Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04493 ATGAAGAAGAATTTGAACCTGGAACTTCGCCTCGTCCCACCTTCCATTAGTTCCGATTTTCCTACCTCAATGGAAGGTGAAGCACAAGAGCAGCAGCAGCAGCACAGGCCTTTGACCATTGTCTACGATGGCAAGATTTTCGTTCGTGATGCAACAGAGATTCAGGCCAGGTCTATTTTAATGCTTGCAAAAAAAGAAATGGAGGATAAAGTGAGGACACCAACTGAATCATCATCAGAGCCATCTTCACCAGCAGTATTTACCAGTAACTTGTATAGCCCTGGAACTTCACTTTCCATGAAAAAAACACTTCAAAGGTTTCTCCAGAAGAGGAAGAATCGGATCCAAGAAGCATCACCTTACCATTTTAATCAGCAGAAATAA 384 0.4245 MKKNLNLELRLVPPSISSDFPTSMEGEAQEQQQQHRPLTIVYDGKIFVRDATEIQARSILMLAKKEMEDKVRTPTESSSEPSSPAVFTSNLYSPGTSLSMKKTLQRFLQKRKNRIQEASPYHFNQQK 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04493 127 MobiDBLite consensus disorder prediction 67 96 - -
Vivi5g04493 127 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 19 122 IPR040390 -
Vivi5g04493 127 MobiDBLite consensus disorder prediction 16 35 - -
Vivi5g04493 127 MobiDBLite consensus disorder prediction 76 96 - -
Vivi5g04493 127 Pfam tify domain 33 63 IPR010399 -
Vivi5g04493 127 Pfam Jas motif 101 121 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04493 Vivi-Chr5 142971453 142973908 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04493 1 122 Tify Gene Family AT1G30135 41.538 9.43e-23 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vivi5g04493 tify 8.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04493 - - gmx:100305565 146.747