Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04487 ATGGATGATGAAACTCATACTACTTTGCCAAATGGATTCACCACAGAAATTCCTGAAACTCAATCTTTAAAAACAATCAACAATCATAATAACAACAACAACACTACCACCAACAATAAAGAACAAGACCGTTTTCTTCCCATAGCAAACGTTGGTAGAATAATGAAAAAAGTGATTCCAGCAAACGGCAAAATCTCAAAGGACGCAAAAGAAACAGTTCAAGAATGTGTCTCCGAGTTCATAAGTTTCGTCACCGGAGAAGCCTCCGATAAATGTCAAAGAGAAAAGAGAAAAACTATCAATGGTGATGATATCATTTGGGCTATTACAACTTTAGGGTTTGAAGATTACGTTGAACCGTTAAAATCTTATCTTCAAAAATATAGAGATATCGAAGGTGAGAAAGTTAATGTCCCTAAACAACAAAGATCTGAACAAAGGCTACATCAACAACATCAACATCAACAGCATCAACAACATAATCAAGATGAATTAAATAATCAACATTTCAATAATAGTGTATATACTTCAACAAATCTCATTTCTCAACCTTCTTATGTCACCAATGATCAACCATTTCCGTTACCTTTCTCGTCCAATTCGATTCAAAAACAGTTACGGCCGCAAGATCAGATCGATTCCTTAGGCCATTGGTATGAATGA 663 0.3499 MDDETHTTLPNGFTTEIPETQSLKTINNHNNNNNTTTNNKEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVEPLKSYLQKYRDIEGEKVNVPKQQRSEQRLHQQHQHQQHQQHNQDELNNQHFNNSVYTSTNLISQPSYVTNDQPFPLPFSSNSIQKQLRPQDQIDSLGHWYE 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04487 220 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Vivi5g04487 220 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Vivi5g04487 220 PRINTS CCAAT-binding transcription factor subunit A signature 111 129 - -
Vivi5g04487 220 FunFam Nuclear transcription factor Y subunit B-3 34 161 - -
Vivi5g04487 220 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 27 169 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vivi5g04487 220 MobiDBLite consensus disorder prediction 138 159 - -
Vivi5g04487 220 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 45 109 IPR003958 -
Vivi5g04487 220 Gene3D Histone, subunit A 32 172 IPR009072 GO:0046982
Vivi5g04487 220 MobiDBLite consensus disorder prediction 198 220 - -
Vivi5g04487 220 SUPERFAMILY Histone-fold 42 161 IPR009072 GO:0046982
Vivi5g04487 220 ProSitePatterns NF-YB/HAP3 subunit signature. 76 92 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vivi5g04487 220 MobiDBLite consensus disorder prediction 138 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04487 Vivi-Chr5 142842063 142842725 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04487 40 218 CCAAT-HAP3 Transcription Factor Family AT2G13570 67.935 2.45e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vivi5g04487 CBFD_NFYB_HMF 3.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04487 K08065 - gmx:100778216 292.737