Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04480 ATGATGGGGAGTGAAAGTAGTGTGAAGCTTCCACCTGGGTTTTACTTTTCTCCAACAGATGAAGAACTAGTCCTTCATTTTCTATATTCCAAGGCTTCTTTACCATATCATCCTAACATCATACCTCAACTTCACTTGTCTCAATATCATCCTTGGGACCTATACGGTAAAGCATTATCAAGTGGAAATCAACACTACTTTTTCACCGAAGAGAAGGAAAATAGAAGCACTGAAAATGGATATTGGAAGGAAATTGGAGTCACAAAACCTATAAGTAAATTGGGAATAAAGAAGTATCTTGTGTTCAACCTTGACCAAGGAAGTGAAACCAGTTGGGTAATGGAAGAGTATCATATTTCTGAATCTGAATCTTGGGAAAGACCAAATCATGATGAGAGTTGGAGCAAATGGGTTTTATGCAAAGTGTATGAAAAGAATATGTCACAACAAGGTGCAAGCTGTTGTCATAGCGATGATGATAATGAATCAGAGGTGTCATGGCTAGATCAAGTTTTTATGTCGTTAGATGATGATGATTTTGATCAAACAAACCTACATAATTAA 564 0.3652 MMGSESSVKLPPGFYFSPTDEELVLHFLYSKASLPYHPNIIPQLHLSQYHPWDLYGKALSSGNQHYFFTEEKENRSTENGYWKEIGVTKPISKLGIKKYLVFNLDQGSETSWVMEEYHISESESWERPNHDESWSKWVLCKVYEKNMSQQGASCCHSDDDNESEVSWLDQVFMSLDDDDFDQTNLHN 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04480 187 Pfam No apical meristem (NAM) protein 11 119 IPR003441 GO:0003677|GO:0006355
Vivi5g04480 187 PANTHER NAC TRANSCRIPTION FACTOR 56 10 158 - -
Vivi5g04480 187 Gene3D NAC domain 19 150 IPR036093 GO:0003677|GO:0006355
Vivi5g04480 187 SUPERFAMILY NAC domain 6 145 IPR036093 GO:0003677|GO:0006355
Vivi5g04480 187 ProSiteProfiles NAC domain profile. 10 145 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04480 Vivi-Chr5 142753526 142754537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04480 1 145 NAC Transcription Factor Family AT1G77450 40.625 2.53e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi5g04480 NAM 6.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04480 - - gmx:100170711 243.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04480 5 142753526 142754537 Vivi5g04480 5 142753526 142754537 ECH