Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04472 ATGCCGGCGTGGTGGAGTAGAAAGTCATCAAAGAACAAACAAGAGCGTGACGGTAACGATAATGATGAAGAAGATGAAGAAGAACAATCACGCGGTGGAGTTCTTCAGTTCAATTTCATGAAATCGCCGATCAACGCGATTAGGAACGGTGATAGTAAGAAGAGTAAGGTGAAGAAACAGAAGCCGAAGAGTTTTGATGAGGTTTTCAACCGGAATTCACCGAGGACTAGTAGGGAATTTGATGGCGGCGCCGCCACTGAAAAGAAAGGAGTCCCGTTGCCTCTTCCTGCTCACTGTGATCAGGCTTTGGGATCTCCTTCTGTTTCTGGCTCTAGTGTTAGTTCGTCTACCTCTTTTGATGATCATCCGATTTCTCCTCACTTCGTTTCTAATAACAGAGGACAAGATGAGGTGAAGTTCAATGCGAGGTCAAGAAGTCCAGGTCCTGCGTCAAGAGGACCTACAAGTCCTACATCACCTCTTCATCCAAGGTTGCAGGTTTTGAGTCTAGACTCACCTACTGGAAAGCAAGACGATGGAAGGAGTCAATGTCATCCGTTGCCTCTTCCACCAGGTTCTCCTACTAGTCCTTCTTCTGCTCTTAGCAACACACGGTCAAGTGGATCGTTCGAAAACACTACCCCTAACCTGTCCAAGTGGAAGAAAGGAAAGCTTCTAGGCCGGGGAACATTTGGGCATGTTTATCTTGGATTCAATAGTGAAAATGGACAAATGTGTGCAATAAAAGAAGTCAGGGTTGGCTGTGACGATCAAAATTCAAAAGAGTGCCTCAAACAACTTAACCAGGAGATAAATTTGCTTAATCAGCTTTCACACCCAAACATTGTTCAATACCATGGGAGTGAACTGGCAGAGGAGTCACTTTCTGTTTATTTGGAATATGTCTCTGGTGGTTCTATCCATAAATTACTTCAGGAATATGGACCGTTCAAGGAGCCTGTTATTCAAAATTATACCAGGCAGATTGTCTCTGGACTTGCCTATCTACATGGAAGAAATACAGTACACAGGGATATCAAAGGGGCTAACATACTAGTTGATCCTAATGGTGAAATCAAACTAGCAGACTTTGGAATGGCTAAGCATATAACTTCTGCTGCTTCAATGCTTTCATTCAAAGGAAGTCCGTACTGGATGGCACCTGAGGTTGTAATGAACACAAATGGCTATAGCCTTCCAGTTGATATATGGAGCTTGGGATGCACACTTATTGAAATGGCAGCGTCGAAGCCTCCGTGGAGTCAGTATGAAGGGGTCGCTGCAATATTTAAAATTGGAAACAGCAAAGACATGCCTGAAATTCCTGAACATCTGTCAAATGATGCGAAGAATTTCATTATGTTATGTTTACAGCGGGACCCATTAGCTCGCCCAACAGCCCAGAAATTACTAGAGCACCCCTTCATTAGAGATCAATCAGCAACAAGAGCTGCAACCAGAGATGTTTCCTCTTACATGTTTGATGGAAGCCGAACACCGCCTGTTTTAGAGCCTCATTCCAATAGAAGAAGTATAACATCACTTGATGGAGACTATGCAACGAAGTCAGCTATTGCAGCTCCACGTGCAACAAGGAGTCCAAGAGATCACACAAGAATGATCACATCTTTACCAGTATCTCCCTCTTCAAGTCCATTGCGACAGTATGGACTAGATCATAGGAGCTGTTTCTATTCTCCTCCTCATCCATCTTACACATTGATGGGACAAAATAGTTACACTTTGAATGACACACCCTCTTATCCAGTGAGATCAAATCCAACATTTACTCTTGACCCTAGGCACGAAACATCTAGATACAAAGCCCATACACCACCTGGCGGATCTCCAAGAATGAGGTTCATTTGA 1869 0.4371 MPAWWSRKSSKNKQERDGNDNDEEDEEEQSRGGVLQFNFMKSPINAIRNGDSKKSKVKKQKPKSFDEVFNRNSPRTSREFDGGAATEKKGVPLPLPAHCDQALGSPSVSGSSVSSSTSFDDHPISPHFVSNNRGQDEVKFNARSRSPGPASRGPTSPTSPLHPRLQVLSLDSPTGKQDDGRSQCHPLPLPPGSPTSPSSALSNTRSSGSFENTTPNLSKWKKGKLLGRGTFGHVYLGFNSENGQMCAIKEVRVGCDDQNSKECLKQLNQEINLLNQLSHPNIVQYHGSELAEESLSVYLEYVSGGSIHKLLQEYGPFKEPVIQNYTRQIVSGLAYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHITSAASMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTLIEMAASKPPWSQYEGVAAIFKIGNSKDMPEIPEHLSNDAKNFIMLCLQRDPLARPTAQKLLEHPFIRDQSATRAATRDVSSYMFDGSRTPPVLEPHSNRRSITSLDGDYATKSAIAAPRATRSPRDHTRMITSLPVSPSSSPLRQYGLDHRSCFYSPPHPSYTLMGQNSYTLNDTPSYPVRSNPTFTLDPRHETSRYKAHTPPGGSPRMRFI 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04472 622 SUPERFAMILY Protein kinase-like (PK-like) 218 555 IPR011009 -
Vivi5g04472 622 MobiDBLite consensus disorder prediction 1 221 - -
Vivi5g04472 622 Pfam Protein kinase domain 221 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04472 622 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 6 488 - -
Vivi5g04472 622 FunFam Mitogen-activated protein kinase kinase kinase 218 497 - -
Vivi5g04472 622 Gene3D Transferase(Phosphotransferase) domain 1 217 499 - -
Vivi5g04472 622 CDD STKc_MEKK1_plant 219 476 - -
Vivi5g04472 622 MobiDBLite consensus disorder prediction 60 74 - -
Vivi5g04472 622 ProSiteProfiles Protein kinase domain profile. 220 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04472 622 MobiDBLite consensus disorder prediction 196 219 - -
Vivi5g04472 622 MobiDBLite consensus disorder prediction 597 622 - -
Vivi5g04472 622 MobiDBLite consensus disorder prediction 148 179 - -
Vivi5g04472 622 ProSitePatterns Protein kinases ATP-binding region signature. 226 249 IPR017441 GO:0005524
Vivi5g04472 622 SMART serkin_6 220 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04472 622 MobiDBLite consensus disorder prediction 104 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04472 Vivi-Chr5 142662094 142666656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04472 1 535 MAP Kinase Kinase Kinase AT1G53570 56.614 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vivi5g04472 Pkinase 1.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04472 K04421 - gmx:100787064 890.952