Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04464 ATGGCTATACCGAAATTGATTCCTGGGTTTCGATTCCATCCTACTGGAGTTGAATTGATTAAGTACTTTCTAAAAAGGAAAGTCATGGGAAAAAAGTTTCATGCTGATGTCATTGCTGAACTTGACATCTACAAGTACGCACCTTGGGATCTCCCAGATATGGCTTATCTGAAAAATGGGGATTTGGAATGGTACTTCTTCTGTCCGATCGAGAAGAAGTATGGAAGTGGGGGGAGGTTGAATCGAGCTACTGAAATTGGGTTTTGGAAAGCTACTGGTAAGGATAGAGCTGTTCAACACAATAATCATACTGTTGGGATGATAAAAACTTTGGTGTTTCATACTGGAAAAGCACCTCGTGGAGATCGCACGGATTGGGTTATGCATGAGTATAGGCTTGAAGATAAGGACCTGGCTGACAAAGGAATTGTTCAGGATTCATATGTGATCTGTAGGGTATTTCAGAAGGAAGGTCCCGGTCCCAACAATGGTGCACAATATGGAAAACCATTTATTGAAGAAGACAGTGATGATGAAGTGGGAATACCTTTTGTTGAGTCGACTGCGCTTGTTCCCAGTTTGCCTGTTAGTTATGTTACGAATGACCAGAATCTTCAAGCTCATAGATGTAGTGGTTCAATATCCATGCAATGTCAATCAGGATTGATGCATTCTCCCATTCCTGTGAATTCCTGTCACACAGGATTGATTCCTTCTCCAGATCCTGCGAATTCATGTCAAACTGGATTGATGCCTTCTCCCGATCCCATGAGTTCATGTCAAACTGAATTGATGCCTTCTCCCGATCCCGTGCATTCATGTCAAACTGGATTGATGCCTTCTCTCAATCCTGCGAATTCATGTCGATCTGGATTGATGCTTTCTCCCTATCCTGTGAATTCATGTCAAACTGGATCGACGCCTTGTCACGATCCTGTGAATTCGTGTCAAACTGGATCGACGCCTTGTCACGATCCTGTGAATTCGTGTCAAACTGGATCGACGCCTTGTCACGATCCTGTGAATTCATGTCAAACTGGATCGACGCCTTCTCCCGATCCTGTGAATTCCTGTCAAACTGGATCGATGCCTACTCTCAATCCCATGAATTCATGTATAACTGGATTGACGCCTTCTCCAGACCCTGCAAATCATTCATATCCAGGCAATCAAGCTGTTAATAATGATGATGATATTATATCAATGCTTGATATTTTCAAAGACGACAACACATTGCCTGAGGAAAATATTGCTGATGGTGCACCTATAAGTGACTTTTTTGAGGGTTTGGGAGACCTGGATTGCACGACCGCATTTGGATCCTTTTACCAGAATGCTGACTTTAGCTCAGACGGAATGGGCTTGATAGATCTAGACTCTGAGCTGTTCTGGTAG 1395 0.4315 MAIPKLIPGFRFHPTGVELIKYFLKRKVMGKKFHADVIAELDIYKYAPWDLPDMAYLKNGDLEWYFFCPIEKKYGSGGRLNRATEIGFWKATGKDRAVQHNNHTVGMIKTLVFHTGKAPRGDRTDWVMHEYRLEDKDLADKGIVQDSYVICRVFQKEGPGPNNGAQYGKPFIEEDSDDEVGIPFVESTALVPSLPVSYVTNDQNLQAHRCSGSISMQCQSGLMHSPIPVNSCHTGLIPSPDPANSCQTGLMPSPDPMSSCQTELMPSPDPVHSCQTGLMPSLNPANSCRSGLMLSPYPVNSCQTGSTPCHDPVNSCQTGSTPCHDPVNSCQTGSTPCHDPVNSCQTGSTPSPDPVNSCQTGSMPTLNPMNSCITGLTPSPDPANHSYPGNQAVNNDDDIISMLDIFKDDNTLPEENIADGAPISDFFEGLGDLDCTTAFGSFYQNADFSSDGMGLIDLDSELFW 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04464 464 MobiDBLite consensus disorder prediction 243 266 - -
Vivi5g04464 464 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 244 - -
Vivi5g04464 464 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Vivi5g04464 464 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Vivi5g04464 464 SUPERFAMILY NAC domain 3 156 IPR036093 GO:0003677|GO:0006355
Vivi5g04464 464 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Vivi5g04464 464 FunFam Nac domain-containing protein 86 15 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04464 Vivi-Chr5 142553247 142556098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04464 1 252 NAC Transcription Factor Family AT5G09330 51.550 6.61e-84 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi5g04464 NAM 2.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04464 - - psat:127100708 744.962