Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04455 ATGTTCATGGAAAATAACCAAAATAATTCTAGTAGTGCATTCACAAGCACTTGGAGTCTTGAGAAAATGGAAACAAATGAACAAAACCATATTATTCTCCAACAAGATCATCATCATCATCATCATCAAATTCCTATGAGTAATTCTTCTGGAATTTGGCCACCAAATAGCTACAACAACATGATGATGGCAGCACCACCACCACAACCACCACCATCTTCATCAGGTTCACTCAGTGACATACTAGGGATCCACCAAATCGAAGAGGTTGAAGAGCAAGAAGAAGAGTTAGGAGCTATGAAGGAAATGATGTACAAGATTGCTGCTATGCAACCGGTGGAAATCGATCCGGCCACAATCCGTAAACCTAAGCGAAGAAACGTCCGAATCAGCGACGATCCACAAAGCGTTGCAGCTAGACATAGAAGAGAAAGAATCAGCGAGAAGATTCGTATCCTTCAGAGACTTGTTCCTGGTGGAACTAAAATGGATACTGCTTCTATGCTTGATGAAGCCATTCGTTATGTTAAGTTCTTGAAGAAGCAAATTAGGTTGCTTCAATCTACTCCTCAAAATCAACAATATCAGTTACCACTTTCATCACAATGCATCAATTCTACTCCTCCTCCTAATGCTTTGTTGTTATCTCCTTCTTGTGACATCGTCTGGCCTTTTGCACCAAATTTACTACTCACTTCCACAACGGCTTCCTCGATCGACTTGTCAGCCGGAGTTCAATTTAGCGCCGGAGAACATTCACATTCACTTCCACATTCTCATTCTCATTCACATGTCCATGTTTGTGATGGCTCATCAAGCTTTAACCATCATGAGGTAATTAGTGAGTAA 849 0.4099 MFMENNQNNSSSAFTSTWSLEKMETNEQNHIILQQDHHHHHHQIPMSNSSGIWPPNSYNNMMMAAPPPQPPPSSSGSLSDILGIHQIEEVEEQEEELGAMKEMMYKIAAMQPVEIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKKQIRLLQSTPQNQQYQLPLSSQCINSTPPPNALLLSPSCDIVWPFAPNLLLTSTTASSIDLSAGVQFSAGEHSHSLPHSHSHSHVHVCDGSSSFNHHEVISE 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04455 282 Pfam Helix-loop-helix DNA-binding domain 140 179 IPR011598 GO:0046983
Vivi5g04455 282 CDD bHLH_AtIND_like 131 188 - -
Vivi5g04455 282 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 8 209 IPR045843 GO:0003700|GO:0006355
Vivi5g04455 282 SMART finulus 136 185 IPR011598 GO:0046983
Vivi5g04455 282 FunFam BHLH transcription factor 133 196 - -
Vivi5g04455 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 196 IPR036638 GO:0046983
Vivi5g04455 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
Vivi5g04455 282 Gene3D - 133 202 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04455 Vivi-Chr5 142393730 142395580 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04455 99 187 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 80.899 1.02e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi5g04455 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04455 - - psat:127102813 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04455 5 142393730 142395580 Vivi5g04455 5 142393730 142395580 ECH