Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04454 ATGTCTTCTCTATTCTCTTTCTCTCTTTTTCTTTTCATCACACTCGCCTCCGCCGCTCGCCACCACCATCACCACCCCTCACCCACTCCCACCACCACCCCGTCTCTCTCTCCCTCCGCCGTACCAGACATCCAACAAGCCTGCAAAGCCACCCGTTTCCCTCAACAATGCCAAACCTCCCTCTCAAAACTCCCTCCCAATTCCTCCACTCTCCAACTCCTCCTATTCTCCATCGCACAATCCTCCGAAAATCTCGTAACCGCCAAATCCATGGTTAAATCCATTCTCGACTCTTCCAAAGACAGCCGTAACCGCACCGTCGCGGCAACCACCTGCCTCGAAACTCTAACCAACTCTCAACACCGCATTTCTCTCTCCACCGACGCACTCCCACGTGGAAAAACCAAAGACGCACGAGCCTGGCTCAGCGCTGCCCTCGCCTATCAATACGACTGCGAGAACGGACTCAAATACGCCAACGACACCCGCGCCGTCGGTGAAACGATGTCGTTTCTCGAATCCTTACAAATTCTCTCCAGTAACGCTCTTGCCATGGCGTTTTCATACGACGTTTACGGTAACGACACTTCGCTGTGGAAGCTTCCGACCACCGAGCGCGACGGTTTCTGGCAAGCGCCTCAATCAGGCGGAGGATCCAGCTCCAACCCAGGGATTCCACCGACGTTGAAACCGGATGTTACGGTGTGTAAGGGAGGGGAGAATGGATGTTACAAGACGGTGCAAGAAGCGGTTAACGCAGCGCCGGATAACGCCGTTGGCGGGAAGAGGTTTGTGATATTTATAAAAGAAGGGGTTTATGAAGAAACCGTTAGGGTTCCGTTAGAGAAGACGAATTTGGTGTTCTTGGGTGATGGCATTGGGAAGACTGTCATCACAGGGTCTGCTAACGTTGGCCAGCCCGGAATGACTACTTACAATTCAGCCACAGTCGCGGTTCTTGGCGATGGATTCATGGCAAAGGATATAACAATCCAAAACACAGCAGGTCCTGATGCACATCAAGCAGTGGCATTAAGATTAGACAGTGATCTTTCTGTAATTGAGAATTGTGAGTTCGTAGGAAATCAAGACACTCTTTATGCTCATTCGCTGCGCCAATTCTACAAATCATGCCGCATTATAGGAAACGTGGATTTCATCTTTGGAAATTCAGCTTCAATCTTTCAAGACTGTCAAATTCTGGTTCGTCCTAGACAAGTCAAGCCGGAGAAAGGTGAGAACAATGCAGTCACGGCTCATGGTAGAACAGACCCTTCACAAACTACAGGGTTTGTTTTTCAGAACTGTTTGATTAATGGAACTGAGGATTACATGGCATTGTATCATAGTAACCCTAAAGTGCATAAGAACTATTTGGGTAGGCCTTGGAAGGAGTATTCTAGAACAGTTTTTATTAACTCTGTTTTGGAAGAACTTGTTACACCTGGGGGTTGGTTGCCATGGAATGGTGACTTTGCACTTAAGACACTTTATTATGGAGAATTTGAGAATAAAGGAGGTGGTTCTGATTTGTCTCAAAGGGTGTCTTGGAGTAGTAAAATCCCTGCTGAACATGTGTCCAGTTATTCAGTTGAGAATTTCATTCAAGGAAGTGAATGGGTTTCGTCATCTCATTTATCAGCACATCTTCGTAGAAGTCATCACACGATTAATAGGACGCATAAGTAA 1689 0.4754 MSSLFSFSLFLFITLASAARHHHHHPSPTPTTTPSLSPSAVPDIQQACKATRFPQQCQTSLSKLPPNSSTLQLLLFSIAQSSENLVTAKSMVKSILDSSKDSRNRTVAATTCLETLTNSQHRISLSTDALPRGKTKDARAWLSAALAYQYDCENGLKYANDTRAVGETMSFLESLQILSSNALAMAFSYDVYGNDTSLWKLPTTERDGFWQAPQSGGGSSSNPGIPPTLKPDVTVCKGGENGCYKTVQEAVNAAPDNAVGGKRFVIFIKEGVYEETVRVPLEKTNLVFLGDGIGKTVITGSANVGQPGMTTYNSATVAVLGDGFMAKDITIQNTAGPDAHQAVALRLDSDLSVIENCEFVGNQDTLYAHSLRQFYKSCRIIGNVDFIFGNSASIFQDCQILVRPRQVKPEKGENNAVTAHGRTDPSQTTGFVFQNCLINGTEDYMALYHSNPKVHKNYLGRPWKEYSRTVFINSVLEELVTPGGWLPWNGDFALKTLYYGEFENKGGGSDLSQRVSWSSKIPAEHVSSYSVENFIQGSEWVSSSHLSAHLRRSHHTINRTHK 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04454 562 NCBIfam pectinesterase inhibitor domain 7 184 IPR006501 GO:0004857
Vivi5g04454 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 185 IPR035513 -
Vivi5g04454 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 188 IPR035513 -
Vivi5g04454 562 CDD PMEI-like_3 47 185 - -
Vivi5g04454 562 MobiDBLite consensus disorder prediction 22 41 - -
Vivi5g04454 562 Pfam Plant invertase/pectin methylesterase inhibitor 44 185 IPR006501 GO:0004857
Vivi5g04454 562 SMART PMEI_2 39 185 IPR006501 GO:0004857
Vivi5g04454 562 Gene3D - 227 550 IPR012334 -
Vivi5g04454 562 FunFam Probable pectinesterase/pectinesterase inhibitor 51 42 188 - -
Vivi5g04454 562 PANTHER PECTINESTERASE 15 542 - -
Vivi5g04454 562 FunFam Pectinesterase 227 551 - -
Vivi5g04454 562 Pfam Pectinesterase 232 537 IPR000070 GO:0030599|GO:0042545
Vivi5g04454 562 SUPERFAMILY Pectin lyase-like 228 544 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04454 Vivi-Chr5 142336536 142338732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04454 37 544 Carbohydrate Esterase AT5G09760 65.243 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04454 - - mtr:11442613 906.746