Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04442 ATGGTTAGAGACGATTTGTACATCACGGTGCCGAGTTTATTCCGGTGTCCGATATCGCTTGACGTGATGAAATCTCCGGTGAGTCTCTGTACCGGAGTTACGTACGACCGTTCAAGTATCCAACGCTGGCTGGATAACGGGAATAACACTTGTCCGGCCACTATGCAGATTCTTCAAACGAAGGATTTCATACCTAATCGCACCTTACAGAGGCTAATCCAGATCTGGTCCGATTCAGTTCGCGACCGAGTCGACTCGCCTGATTCGCCTCTATCCGGTGGCTCGTTTGATAAACGTGATCAGTTACTTGTCGCTTTGACCGATTTGGAGTCTGGCAGTGAGAACAGGTTCGAGTCGCTTGAGAAAATCGTTGGGTTCGCTAAAGATTCTGATGAGAATAGTGTTTTTCTGGCGAAAACTGAAGGCTTCGTGGCGTTGTTGGTAGGTTTTCTGGAAAATGTTGACGGTGGAGTGGAACGGAGTGTGGAATTGCTTGAGCAGGTTGTTATTGCGTTGGATTTGGTTCTGAGTAAAATTGAGAATCGCGAGTCGATTCTGAAGAACCAGAAGGAGAGGGAAGGTGAGAGTGTAGATTCTTTGCTTCTTGTTTTGAAACAGGGAAGCTCTGAATCGAAGATTGCATCGATTAGGGTTTTGAAATCGATAGCCGATGACATGGAATCGAAGCTTCTAATAGCGGAGAAGGAAGGTTTATTATCTCAACTACTCAATCTAATCACGCCGGAGAATGATGTAAACCTAATCGAGAACTCACTCTCGTGTCTGGTGGCAATATCAACGCCGAAGAGGAACAAATCGAAATTGATTCATCTCGGAGCAGTGAAAGTATTCTCGAACATTCTAACATCATCTTCGAATTTGAGTGTTTCGGTGACGGAGAAGGTGCTGAAACTACTTGAAACGGTGTCGTCGATGAAAGAAGGGAGGTTGGAGATATGCGAAACACCGTCCTGCGTGGCGGGGATAGCAAACAAAGTCTTGAAAGTGTCCGCCGTAGCGACGGAGCACGCGGTTACGATACTATGGAGTGTATGTTATTTGTTTCGTGATCAGAAAGCGCAAGAAGCGGTTACGATAGCTAATGGATTGACGAAGATTTTACTTCTGATGCAGAGTAATTGCACGCCACATGTTCGTCAAATGTCCGTGGATTTGCTTAAGATATTTCGTGTTAATTCTAAGTCGTGTCTTTCTTCGTATGACACTAAAACGACTCATATTATGCCGTTTTGA 1254 0.4506 MVRDDLYITVPSLFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQILQTKDFIPNRTLQRLIQIWSDSVRDRVDSPDSPLSGGSFDKRDQLLVALTDLESGSENRFESLEKIVGFAKDSDENSVFLAKTEGFVALLVGFLENVDGGVERSVELLEQVVIALDLVLSKIENRESILKNQKEREGESVDSLLLVLKQGSSESKIASIRVLKSIADDMESKLLIAEKEGLLSQLLNLITPENDVNLIENSLSCLVAISTPKRNKSKLIHLGAVKVFSNILTSSSNLSVSVTEKVLKLLETVSSMKEGRLEICETPSCVAGIANKVLKVSAVATEHAVTILWSVCYLFRDQKAQEAVTIANGLTKILLLMQSNCTPHVRQMSVDLLKIFRVNSKSCLSSYDTKTTHIMPF 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04442 417 Gene3D - 95 406 IPR011989 -
Vivi5g04442 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 86 IPR013083 -
Vivi5g04442 417 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Vivi5g04442 417 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Vivi5g04442 417 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Vivi5g04442 417 CDD RING-Ubox_PUB 11 63 IPR045210 -
Vivi5g04442 417 PANTHER WDSAM1 PROTEIN 9 405 IPR045185 GO:0061630
Vivi5g04442 417 SUPERFAMILY RING/U-box 5 77 - -
Vivi5g04442 417 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Vivi5g04442 417 SUPERFAMILY ARM repeat 195 403 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04442 Vivi-Chr5 142215241 142216790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04442 1 417 U-box Gene Family AT5G64660 54.567 2.12e-142 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04442 - - cam:101496984 646.736