Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04439 ATGAGTGGAGGTGGCAGAAAGCTATCTTCAAACCGGGTTTCAAGAGATGAACATGAATTTTCACCCGAGAGTGCTACTAATAGCAGTAGTTCAAGGTATTTGGAAAGAAATGATATGATAAATCCCAGAATGGGATTTTCATGCAAGGAACCTTTTTCTAGAGGCAGAGGTTCAAGTAAGGATGATGTTTGGAACCCAGACTACAAAGTTTTGGATGCAACAATCGCACAAGACACTGATGGAAGTTACGATATGAAAACGTCTCCAGGTTTTGAGGAATCAAAAAATAGGAAGCGCAATCAATCTGCAAAAAATGATTACGGCAGGAGAAGCAGGAGCCAAAGCCGGAGCCCTCCACGTGGGTTTAGGTATTCAGCTGTCGATGATGAGAACAGAACGAGGGTTGGCGATGATGAGAACAGAACGAGGGTTGGCAGATTGATACGACCTTGTAGAGATTTTGCTGCTGGGAGCTGCAGAAGAGGAAGCCATTGTCATTTCCTTCACCATGATAAGCAAAGTTATGAGGATAGTAGGGAAAGTAGACACATGCAAGATGGACCCAGATATTGTAATCCCCGTGAGAGCGGTGATTATTCTCTTACAAGTCGAAGATCTAATGAAGCTTGTATTCATTTTGCAAAGGGAAGGTGTAGAGCGGGAGAATCATGCAAGTATGTGCATCATGGCAATTCTGATGAGTTTGATGAAGTTTCTGCAGATGAATCATCTAGGAGAAGGGAAATTGATAGAAGACACATAGATAGTTCATTCAAGCAGGGTGCCCTGCATTATCCAAACCACAGTGGTAATATTCCTTGCAAATTTTTTGCTTTTGGAAATTGTAGGAATGGTAAAGATTGTAGGTTTTCTCATGATAGACAAGCATTTACCAGCCCTATTAGAAGATTAAGGGATGATAGGTCAAGGAGTAATCATGGTGAAGATCAGGAGTTGGATAGACAAATAGTGAGCAATTCAGTTACTCCTAATGAAAGGCGAAGAGATGGTAGACGGGGTTCAGATGGCAGTATGGCTGATGTAGATAAAGTTTGGGATGGTCCAAAGCCGAATAATTTAGTTGCTGTCTCTGTTACTGCAAACCTGGTTGAGGACAACAAAAAAGGTATATTAGGTGCCCCAGAACCTGGATTCATGGTTTGGCCAATGAATAATGGATTGGACCATAGCTCAGACAGGAACAGAATACATAATGAATCACCATTTACAATTGATAAGGAAGCCAACTGTAGGACGGCAGAAAATGCAGCTGACAACATTCTCATTTCTCAGTCAGTAGGTGGAGGCTTTTGGCCTGGTGATGAAAAAATGTCTCCTGATTGGAATTATGGCGCAAGATCTTCCAGCCATATTAACGAGGAGCATGGGCAGAATAAGCAAGAAGGTGCTCCAGGGCAAGGACTAAATCAGAATGCTCAGAATATAACTGCTTCACATGTGGTTGGACAGAGTCAAGCAACAGTTTCCATTGTTCCTCCGAGATCAAGAGTTATTGAAGGTTTACAGAACCCGGAGCTCTTTACTAATGCAAACTACACTGTAGAACCAACTATCATGAATGCAAGCCTATTGCAAATTGGTTCAGGAAATACTCCAATTCAGAACGTAGTCAGTAAAGAACAACTTAGCTGCCTCTCAGCCTCTCTCGCACATTTTCTCGGAACAGATCAGCAGCTCCCACAACTTCAGTCTACTATAAATTCTTGTGATGCAAAGGACACTCTCTTCGTAAGCAAAATTGAAGGGCAATCATCGAAGCAATATGATCCAATGTGTGATAGAATGGAGCCCAAGAATATTAATGCAAGTGGGGTCTCTCCAACCTTTTCTCCTAATACAAAGATTCCAAAAGATACAGCCAGAATTCCACCACTGTTGTCTAACCCGGGACAAAATTCTGATCATTCTCGTAAACAGGAGATTAGCAAAATGGACACTGACAAAAAGGAAATCTCTCAATCTGAAAATAAAATTACAGAAGAGAATAGTCCTTTGGTAAACATGGACCAAAATGATGGACCTGATGAGGCCAAGACATTAAAGGACATAAAGGGGATTCGAGCATTTAAAACTTCATTGGTAGAGCTCATTAAGGAGATCCTAAAACCAACATGGAAAGATGGTAAAGTCACCAAAGAAGATTATAAAGCAATTGTGAAGAAGGTTACTGATAAAGTAACTGGTACAGTAAATCGGGTACATATACCTCAGACACAAGAGAAAATTGAACGCTATTTATCAGTTTCGAAACCAAAGCTTAACAAACTTGTACAGGCTTATGTGGAAAAGCTTCAGAAGGCCTAA 2325 0.4103 MSGGGRKLSSNRVSRDEHEFSPESATNSSSSRYLERNDMINPRMGFSCKEPFSRGRGSSKDDVWNPDYKVLDATIAQDTDGSYDMKTSPGFEESKNRKRNQSAKNDYGRRSRSQSRSPPRGFRYSAVDDENRTRVGDDENRTRVGRLIRPCRDFAAGSCRRGSHCHFLHHDKQSYEDSRESRHMQDGPRYCNPRESGDYSLTSRRSNEACIHFAKGRCRAGESCKYVHHGNSDEFDEVSADESSRRREIDRRHIDSSFKQGALHYPNHSGNIPCKFFAFGNCRNGKDCRFSHDRQAFTSPIRRLRDDRSRSNHGEDQELDRQIVSNSVTPNERRRDGRRGSDGSMADVDKVWDGPKPNNLVAVSVTANLVEDNKKGILGAPEPGFMVWPMNNGLDHSSDRNRIHNESPFTIDKEANCRTAENAADNILISQSVGGGFWPGDEKMSPDWNYGARSSSHINEEHGQNKQEGAPGQGLNQNAQNITASHVVGQSQATVSIVPPRSRVIEGLQNPELFTNANYTVEPTIMNASLLQIGSGNTPIQNVVSKEQLSCLSASLAHFLGTDQQLPQLQSTINSCDAKDTLFVSKIEGQSSKQYDPMCDRMEPKNINASGVSPTFSPNTKIPKDTARIPPLLSNPGQNSDHSRKQEISKMDTDKKEISQSENKITEENSPLVNMDQNDGPDEAKTLKDIKGIRAFKTSLVELIKEILKPTWKDGKVTKEDYKAIVKKVTDKVTGTVNRVHIPQTQEKIERYLSVSKPKLNKLVQAYVEKLQKA 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04439 774 SMART c3hfinal6 205 230 IPR000571 GO:0046872
Vivi5g04439 774 SMART c3hfinal6 268 294 IPR000571 GO:0046872
Vivi5g04439 774 SMART c3hfinal6 145 171 IPR000571 GO:0046872
Vivi5g04439 774 MobiDBLite consensus disorder prediction 1 138 - -
Vivi5g04439 774 MobiDBLite consensus disorder prediction 301 353 - -
Vivi5g04439 774 SUPERFAMILY CCCH zinc finger 271 293 IPR036855 GO:0046872
Vivi5g04439 774 MobiDBLite consensus disorder prediction 608 622 - -
Vivi5g04439 774 Pfam RNA-binding, Nab2-type zinc finger 273 292 - -
Vivi5g04439 774 Pfam RNA-binding, Nab2-type zinc finger 209 228 - -
Vivi5g04439 774 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 773 - -
Vivi5g04439 774 Gene3D - 146 233 - -
Vivi5g04439 774 MobiDBLite consensus disorder prediction 123 138 - -
Vivi5g04439 774 Gene3D - 245 306 - -
Vivi5g04439 774 SUPERFAMILY CCCH zinc finger 205 229 IPR036855 GO:0046872
Vivi5g04439 774 MobiDBLite consensus disorder prediction 301 320 - -
Vivi5g04439 774 MobiDBLite consensus disorder prediction 176 195 - -
Vivi5g04439 774 MobiDBLite consensus disorder prediction 90 113 - -
Vivi5g04439 774 MobiDBLite consensus disorder prediction 606 684 - -
Vivi5g04439 774 MobiDBLite consensus disorder prediction 331 346 - -
Vivi5g04439 774 ProSiteProfiles Zinc finger C3H1-type profile. 150 172 IPR000571 GO:0046872
Vivi5g04439 774 ProSiteProfiles Zinc finger C3H1-type profile. 269 295 IPR000571 GO:0046872
Vivi5g04439 774 MobiDBLite consensus disorder prediction 643 663 - -
Vivi5g04439 774 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 149 170 IPR000571 GO:0046872
Vivi5g04439 774 MobiDBLite consensus disorder prediction 449 477 - -
Vivi5g04439 774 ProSiteProfiles Zinc finger C3H1-type profile. 204 232 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04439 Vivi-Chr5 142141948 142151127 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi5g04439 zf-CCCH 0.00015 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04439 - K22909 gmx:100783856 748.043