Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04437 ATGAGTGGAGGTGGCAGAAAGCTATCTTCAAACCGGGTTTCAAGAGATGAACATGAATTTTCACCCGAGAGTGCTACTAATAGCAGTAGTTCAAGGTATTTGGAAAGAAATGATATGATAAATCCCAGAATGGGATTTTCATGCAAGGAACCTTTTTCTAGAGGCAGAGGTTCAAGTAAGGATGATGTTTGGAACCCAGACTACAAAGTTTTGGATGCAACAATCGCACAAGACACTGATGGAAGTTACGATATGAAAACGTCTCCAGGTTTTGAGGAATCAAAAAATAGGAAGCGCAATCAATCTGCAAAAAATGATTACGGCAGTATTAATATGCTTATGAGGATAAATAGGAAGCACAGTCAATCTGCAAAAAATGATTACGGCAGGAGAAGCAGGAGCCAAAGCCGGAGCCCTCCACGTGGGTTTAGGTATTCAGCTGTCGATGATGAGAACAGAACGAGGGTTGGCGATGATGAGAACAGAACGAGGGTTGGCAGATTGATACGACCTTGTAGAGATTTTGCTGCTGGGAGCTGCAGAAGAGGAAGCCATTGTCATTTCCTTCACCATGATAAGCAAAGTTATGAGGATAGTAGGGAAAGTAGACACATGCAAGATGGACCCAGATATTGTAATCCCCGTGAGAGCGGTGATTATTCTCTTACAAGTCGAAGATCTAATGAAGCTTGTATTCATTTTGCAAAGGGAAGGTGTAGAGCGGGAGAATCATGCAAGTATGTGCATCATGGCAATTCTGATGAGTTTGATGAAGTTTCTGCAGATGAATCATCTAGGAGAAGGGAAATTGATAGAAGACACATAGATAGTTCATTCAAGCAGGGTGCCCTGCATTATCCAAACCACAGTGGTAATATTCCTTGCAAATTTTTTGCTTTTGGAAATTGTAGGAATGGTAAAGATTGTAGGTTTTCTCATGATAGACAAGCATTTACCAGCCCTATTAGAAGATTAAGGGATGATAGGTCAAGGAGTAATCATGGTGAAGATCAGGAGTTGGATAGACAAATAGTGAGCAATTCAGTTACTCCTAATGAAAGGCGAAGAGATGGTAGACGGGGTTCAGATGGCAGTATGGCTGATGTAGATAAAGTTTGGGATGGTCCAAAGCCGAATAATTTAGTTGCTGTCTCTGTTACTGCAAACCTGGTTGAGGACAACAAAAAAGGTATATTAGGTGCCCCAGAACCTGGATTCATGGTTTGGCCAATGAATAATGGATTGGACCATAGCTCAGACAGGAACAGAATACATAATGAATCACCATTTACAATTGATAAGGAAGCCAACTGTAGGACGGCAGAAAATGCAGCTGACAACATTCTCATTTCTCAGTCAGTAGGTGGAGGCTTTTGGCCTGGTGATGAAAAAATGTCTCCTGATTGGAATTATGGCGCAAGATCTTCCAGCCATATTAACGAGGAGCATGGGCAGAATAAGCAAGAAGGTGCTCCAGGGCAAGGACTAAATCAGAATGCTCAGAATATAACTGCTTCACATGTGGTTGGACAGAGTCAAGCAACAGTTTCCATTGTTCCTCCGAGATCAAGAGTTATTGAAGGTTTACAGAACCCGGAGCTCTTTACTAATGCAAACTACACTGTAGAACCAACTATCATGAATGCAAGCCTATTGCAAATTGGTTCAGGAAATACTCCAATTCAGAACGTAGTCAGTAAAGAACAACTTAGCTGCCTCTCAGCCTCTCTCGCACATTTTCTCGGAACAGATCAGCAGCTCCCACAACTTCAGTCTACTATAAATTCTTGTGATGCAAAGGACACTCTCTTCGTAAGCAAAATTGAAGGGCAATCATCGAAGCAATATGATCCAATGTGTGATAGAATGGAGCCCAAGAATATTAATGCAAGTGGGGTCTCTCCAACCTTTTCTCCTAATACAAAGATTCCAAAAGATACAGCCAGAATTCCACCACTGTTGTCTAACCCGGGACAAAATTCTGATCATTCTCGTAAACAGGAGATTAGCAAAATGGACACTGACAAAAAGGAAATCTCTCAATCTGAAAATAAAATTACAGAAGAGAATAGTCCTTTGGTAAACATGGACCAAAATGATGGACCTGATGAGGCCAAGACATTAAAGGACATAAAGGGGATTCGAGCATTTAAAACTTCATTGGTAGAGCTCATTAAGGAGATCCTAAAACCAACATGGAAAGATGGTAAAGTCACCAAAGAAGATTATAAAGCAATTGTGAAGAAGGTTACTGATAAAGTAACTGGTACAGTAAATCGGGTACATATACCTCAGACACAAGAGAAAATTGAACGCTATTTATCAGTTTCGAAACCAAAGCTTAACAAACTTGTACAGGCTTATGTGGAAAAGCTTCAGAAGGCCTAA 2388 0.4083 MSGGGRKLSSNRVSRDEHEFSPESATNSSSSRYLERNDMINPRMGFSCKEPFSRGRGSSKDDVWNPDYKVLDATIAQDTDGSYDMKTSPGFEESKNRKRNQSAKNDYGSINMLMRINRKHSQSAKNDYGRRSRSQSRSPPRGFRYSAVDDENRTRVGDDENRTRVGRLIRPCRDFAAGSCRRGSHCHFLHHDKQSYEDSRESRHMQDGPRYCNPRESGDYSLTSRRSNEACIHFAKGRCRAGESCKYVHHGNSDEFDEVSADESSRRREIDRRHIDSSFKQGALHYPNHSGNIPCKFFAFGNCRNGKDCRFSHDRQAFTSPIRRLRDDRSRSNHGEDQELDRQIVSNSVTPNERRRDGRRGSDGSMADVDKVWDGPKPNNLVAVSVTANLVEDNKKGILGAPEPGFMVWPMNNGLDHSSDRNRIHNESPFTIDKEANCRTAENAADNILISQSVGGGFWPGDEKMSPDWNYGARSSSHINEEHGQNKQEGAPGQGLNQNAQNITASHVVGQSQATVSIVPPRSRVIEGLQNPELFTNANYTVEPTIMNASLLQIGSGNTPIQNVVSKEQLSCLSASLAHFLGTDQQLPQLQSTINSCDAKDTLFVSKIEGQSSKQYDPMCDRMEPKNINASGVSPTFSPNTKIPKDTARIPPLLSNPGQNSDHSRKQEISKMDTDKKEISQSENKITEENSPLVNMDQNDGPDEAKTLKDIKGIRAFKTSLVELIKEILKPTWKDGKVTKEDYKAIVKKVTDKVTGTVNRVHIPQTQEKIERYLSVSKPKLNKLVQAYVEKLQKA 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04437 795 ProSiteProfiles Zinc finger C3H1-type profile. 290 316 IPR000571 GO:0046872
Vivi5g04437 795 Gene3D - 167 254 - -
Vivi5g04437 795 ProSiteProfiles Zinc finger C3H1-type profile. 171 193 IPR000571 GO:0046872
Vivi5g04437 795 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 794 - -
Vivi5g04437 795 MobiDBLite consensus disorder prediction 470 498 - -
Vivi5g04437 795 MobiDBLite consensus disorder prediction 144 159 - -
Vivi5g04437 795 MobiDBLite consensus disorder prediction 80 159 - -
Vivi5g04437 795 MobiDBLite consensus disorder prediction 322 374 - -
Vivi5g04437 795 MobiDBLite consensus disorder prediction 664 684 - -
Vivi5g04437 795 MobiDBLite consensus disorder prediction 197 216 - -
Vivi5g04437 795 SMART c3hfinal6 289 315 IPR000571 GO:0046872
Vivi5g04437 795 SMART c3hfinal6 226 251 IPR000571 GO:0046872
Vivi5g04437 795 SMART c3hfinal6 166 192 IPR000571 GO:0046872
Vivi5g04437 795 MobiDBLite consensus disorder prediction 627 705 - -
Vivi5g04437 795 MobiDBLite consensus disorder prediction 120 134 - -
Vivi5g04437 795 ProSiteProfiles Zinc finger C3H1-type profile. 225 253 IPR000571 GO:0046872
Vivi5g04437 795 MobiDBLite consensus disorder prediction 1 65 - -
Vivi5g04437 795 Gene3D - 266 327 - -
Vivi5g04437 795 SUPERFAMILY CCCH zinc finger 226 250 IPR036855 GO:0046872
Vivi5g04437 795 MobiDBLite consensus disorder prediction 322 341 - -
Vivi5g04437 795 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 170 191 IPR000571 GO:0046872
Vivi5g04437 795 Pfam RNA-binding, Nab2-type zinc finger 230 249 - -
Vivi5g04437 795 Pfam RNA-binding, Nab2-type zinc finger 294 313 - -
Vivi5g04437 795 MobiDBLite consensus disorder prediction 352 367 - -
Vivi5g04437 795 MobiDBLite consensus disorder prediction 629 643 - -
Vivi5g04437 795 SUPERFAMILY CCCH zinc finger 292 314 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04437 Vivi-Chr5 142141948 142151127 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi5g04437 zf-CCCH 0.00015 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04437 - K22909 gmx:100783856 744.962