Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04435 ATGCCTTCTCTATTCTCTTTCTCTCTTTTTCTTTTCATCACACTCACCTCCGCCTCCGCCGCTCGCCACCACCATCACCACCCCTCACTCACTCCCACCACCGCCCCTTCTCTCTCTCCCTCCGCCGTACCAGACATCCAGCAAGCCTGCAAAGCCACCCGCTTCCCCCAACAATGCGAAACCTCCCTCTCAAAACTCCCTCCAAATTCCTCCACTCTCCAACTCCTCCTATTCTCCATCGCACAATCCTCCGAAAATCTCGTAACCGCCAAATCCATGGTCAAATCCATTCTCGACTCTTCCAAAGACAGCCGTAACCGTACCGTCGCGGCAACCACCTGCCTCGAAACTCTAACCAACTCTCAACACCGCATTTCTCTCTCCAACGACGCCCTCCCACGTGGAAAAACCAAAGACGCACGAGCCTGGCTCAGCGCTGCCCTCGCCTATCAATACGACTGCGAGAACGGACTCAAATACGCCAACGACACCCGCGCCGTCGGTGAAACGATGTCGTTTCTCGAATCCTTACAAATTCTCTCCAGTAACGCTCTTGCCATGGCGTTTTCATACGACGTTTACGGAAACGACACTTCGCTGTGGAAGCTTCCGACCACCGAGCGCGACGGTTTCTGGCAAGCAGCACAATCGGACGGAGGATCCAGCTCCAACCCAGGGATTCCACCGACGTTAAAACCGGATGTTACGGTGTGTAAGGGAGGGGAGAATGGATGTTACAAGACAGTGCAAGAAGCGGTTAACGCCGCGCCGAGTAACGCCGTTGGCGGGAAAAGGTTTGTGATATTTATAAAAGAAGGGGTTTATGAAGAAACCGTTAGGGTTCCGTTAGAGAAGACGAATTTGGTGTTCTTGGGTGATGGCATTGGGAAGACTGTCATCACAGGGTCTGCTAACGTCGGCCAGCCCGGAATGACTACTTACAATTCAGCCACAGTCGCGGTTCTTGGCGATGGATTCATGGCAAAGGATATAACAATCCAAAACACAGCAGGTCCTGATGCACATCAAGCAGTGGCGTTAAGATTAGACAGTGATCTTTCTGTAATTGAGAATTGTGAGTTTGTAGGAAATCAAGACACTCTTTATGCTCATTCGTTACGCCAATTCTACAAATCATGCCGCATTATAGGAAACGTGGATTTCATCTTTGGAAATTCAGCTTCAATCTTCCAAGACTGTCAAATTTTGGTTCGTCCTAGACAAGTCAAGCCGGAGAAAGGTGAGAACAATGCAGTCACCGCTCATGGTAGAACGGACCCTTCACAAACTACAGGGTTTGTTTTTCAGAACTGTTTGATTAATGGAACTGAGGACTACATGGCATTGTATCATAGTAATCCTAAAGTGCATAAGAACTATTTGGGTAGGCCATGGAAGGAGTATTCTAGAACAGTTTTTATTAACTCTGTTTTGGAAGAACTTGTTACACCTGGGGGTTGGTTGCCATGGAATGGTGACTTTGCACTTAAGACACTTTATTATGGAGAATTTGAGAATAAAGGAGGTGGTTCTGATTTGTCTCAAAGGGTGTCTTGGAGTAGTAAAATCCCTGCTGAACATGTGTCGAGTTATTCCGTTGAGAATTTCATTCAAGGAAGTGAATGGGTTTCGTCATCTCATTTATCAGCACATCTTCGTAGAAGTCATCACATGATTAATAGGACGCATAAGTAA 1695 0.4755 MPSLFSFSLFLFITLTSASAARHHHHHPSLTPTTAPSLSPSAVPDIQQACKATRFPQQCETSLSKLPPNSSTLQLLLFSIAQSSENLVTAKSMVKSILDSSKDSRNRTVAATTCLETLTNSQHRISLSNDALPRGKTKDARAWLSAALAYQYDCENGLKYANDTRAVGETMSFLESLQILSSNALAMAFSYDVYGNDTSLWKLPTTERDGFWQAAQSDGGSSSNPGIPPTLKPDVTVCKGGENGCYKTVQEAVNAAPSNAVGGKRFVIFIKEGVYEETVRVPLEKTNLVFLGDGIGKTVITGSANVGQPGMTTYNSATVAVLGDGFMAKDITIQNTAGPDAHQAVALRLDSDLSVIENCEFVGNQDTLYAHSLRQFYKSCRIIGNVDFIFGNSASIFQDCQILVRPRQVKPEKGENNAVTAHGRTDPSQTTGFVFQNCLINGTEDYMALYHSNPKVHKNYLGRPWKEYSRTVFINSVLEELVTPGGWLPWNGDFALKTLYYGEFENKGGGSDLSQRVSWSSKIPAEHVSSYSVENFIQGSEWVSSSHLSAHLRRSHHMINRTHK 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04435 564 SMART PMEI_2 41 187 IPR006501 GO:0004857
Vivi5g04435 564 Gene3D - 229 552 IPR012334 -
Vivi5g04435 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 44 190 IPR035513 -
Vivi5g04435 564 FunFam Pectinesterase 229 553 - -
Vivi5g04435 564 Pfam Plant invertase/pectin methylesterase inhibitor 46 187 IPR006501 GO:0004857
Vivi5g04435 564 SUPERFAMILY Pectin lyase-like 230 546 IPR011050 -
Vivi5g04435 564 PANTHER PECTINESTERASE 18 544 - -
Vivi5g04435 564 CDD PMEI-like_3 49 187 - -
Vivi5g04435 564 Pfam Pectinesterase 234 539 IPR000070 GO:0030599|GO:0042545
Vivi5g04435 564 NCBIfam pectinesterase inhibitor domain 31 186 IPR006501 GO:0004857
Vivi5g04435 564 FunFam Probable pectinesterase/pectinesterase inhibitor 51 44 190 - -
Vivi5g04435 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 187 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04435 Vivi-Chr5 142125423 142127549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04435 39 546 Carbohydrate Esterase AT5G09760 65.049 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04435 - - mtr:11442613 902.123