Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04428 ATGCTGAGCTCTGATGATGATGATGGAGATATTGATGTATTCTATGACTCATTGGATAGTTTGTCAGGTCAAGATTCTGTTTTAGCCGAAGAAGAGTTTGGTTTCGAAAGGCGTTACGATGAAATTTGGATGAATGAGCCTGTTAGTGTGAAAGAAAGAAGGGAACTTTTTTTGCAGGGTATGGATTTAGCTTATAGTTCGTCCAAGATTTTGTCTCAAGAAAAAATTATGAGGTTTAATGAGAGGATCATGAGGTGCAGTGGAGCAGTCTCAAATGCATGTGTTTTCCCTTCTGATAAAGTATCTGAGAAGACGGTTTTCTCGGGATGGAATGCAACTTCTGAGGCAGAAGTCTTGTTGGAAGGACTTAAAGGGCGTCGCGAGGATGAGGTGGATGCAAGTTCTCAATGGGAAATGAATGAGAAGGTGGATGCAACTTCTACAGCTCCTGAGCACAGAGAAAGAGAAGATGAAGCACAAGAGGAATTTCGGGATTTTGATAAGAGTAAAACTAGTAGGAATAACTGGTGGAAGCGCTTTGTAAATGTCGGAAGAGGCGACGAAGGAAAAGTTAGATCAAAATTTAGTAGAGGAATGAATAAGACAAGTAGGATAAAGGTAAGACGGAATAAAAAGAGGTGGCTTGAGTTCAGTGAGGTATACATTGGACAAGAGATTAAAGCTCACAAAGGATTGGTATGGACTATGAAATTCAGTCCTAATGGTGAGTATTTAGCTAGTGGGGGTGAAGACGGTGTCGTGCGCATATGGCGCGTTATGTCACGTGACAAAAGCCGGCCCTTTATTTTCCTTCCAAATGATATTTTTCAAATAGAGGAATCACCACTGCACGAATTGTTTGGTCATTCCAGTGATATTTTGGATTTGGCTTGGTCTAATTCTGATATTCTTCTCTCGTCTTCTATGGATAAAACTGTCCGCGCTTGGAAAATTGGTTGTGATCAATGTCTACATGTTTTCGCCCACAAAGACTTCGTGACATGCATTCAATTCAACCCTGTTGATGAAAATTACTTCATCAGTGGATCAATAGATGGTAAAGTTCGAATATGGGGGATATGCGAAGAGCGAGTTATTGATTGGGCAGATATACGAGATGTCATAAGTGCTATAAGTTACCAACAAGACGGGAAAGGATTTGTAGTTGGTTCTGTCACAGGTACTTGCCGATTTTATGCTGCTTCAGGAAAATATTTCAAGCTTGAGGCTCAGATAGATATCTGTGGAAAGAAGAAAGCATCAGGCAACAGGATTACCGGCATTCAGTTCTTCCAAAGAAACTGTCAGAGAATTATGATCACGTCAGAAGATTCCAAAATTCGCATATTTGATAGAACTGAGATTGTTCAGAAATACAAAGGCCTTCCGTGGTCAGGAAGTCAGATGTCTGGTTCATTTACATCAAGTGGGAAACATATAATTTCGGTTGGAGAAGACTCGCGTGTTTATATTTGGAACTTCAATGACTTTGAAAGTGCTTCTTCAAGAAAAAAGAAATCCCAGCATTCTTGTGAATATTTTTCCTTCAAGGGTGTAACAGTTGCAATACCTTGGTGTGGCATGAAAGCAGAAGACAGAAATAACATGTCGCGTCCCATTTCAGAAACAAAAGGCAAGCAAGAGTTTGGTTCCGAGGTTAGAGATACAGACCGTTTTTCTCTCGGTAATTGGTTCTTCATAGATGGTACATGCCGAGGTTCTATGACATGGCCCGAGGAGAAACTTCCAACATGGGATTTACCTCTTGCAGAAGACGGATATGATCATCGGAAGTTATATAAAAAAGATAGTAGCCATGGCAAGAATAAATCAGAAACATGGGGACTCACTATAGTGGCAGCTGGCAGTGATGGAACTATCAAGACATTCCACAACTTTAGTTTGCCTGTTAGGCTCTAG 1920 0.4057 MLSSDDDDGDIDVFYDSLDSLSGQDSVLAEEEFGFERRYDEIWMNEPVSVKERRELFLQGMDLAYSSSKILSQEKIMRFNERIMRCSGAVSNACVFPSDKVSEKTVFSGWNATSEAEVLLEGLKGRREDEVDASSQWEMNEKVDATSTAPEHREREDEAQEEFRDFDKSKTSRNNWWKRFVNVGRGDEGKVRSKFSRGMNKTSRIKVRRNKKRWLEFSEVYIGQEIKAHKGLVWTMKFSPNGEYLASGGEDGVVRIWRVMSRDKSRPFIFLPNDIFQIEESPLHELFGHSSDILDLAWSNSDILLSSSMDKTVRAWKIGCDQCLHVFAHKDFVTCIQFNPVDENYFISGSIDGKVRIWGICEERVIDWADIRDVISAISYQQDGKGFVVGSVTGTCRFYAASGKYFKLEAQIDICGKKKASGNRITGIQFFQRNCQRIMITSEDSKIRIFDRTEIVQKYKGLPWSGSQMSGSFTSSGKHIISVGEDSRVYIWNFNDFESASSRKKKSQHSCEYFSFKGVTVAIPWCGMKAEDRNNMSRPISETKGKQEFGSEVRDTDRFSLGNWFFIDGTCRGSMTWPEEKLPTWDLPLAEDGYDHRKLYKKDSSHGKNKSETWGLTIVAAGSDGTIKTFHNFSLPVRL 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04428 639 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 326 358 - -
Vivi5g04428 639 ProSiteProfiles Trp-Asp (WD) repeats profile. 472 502 IPR001680 GO:0005515
Vivi5g04428 639 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 286 318 - -
Vivi5g04428 639 ProSiteProfiles Trp-Asp (WD) repeats profile. 326 358 IPR001680 GO:0005515
Vivi5g04428 639 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 226 259 - -
Vivi5g04428 639 ProSiteProfiles Trp-Asp (WD) repeats profile. 286 326 IPR001680 GO:0005515
Vivi5g04428 639 PRINTS G protein beta WD-40 repeat signature 304 318 IPR020472 -
Vivi5g04428 639 PRINTS G protein beta WD-40 repeat signature 346 360 IPR020472 -
Vivi5g04428 639 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Vivi5g04428 639 SMART WD40_4 279 317 IPR001680 GO:0005515
Vivi5g04428 639 SMART WD40_4 219 258 IPR001680 GO:0005515
Vivi5g04428 639 SMART WD40_4 411 451 IPR001680 GO:0005515
Vivi5g04428 639 SMART WD40_4 361 400 IPR001680 GO:0005515
Vivi5g04428 639 SMART WD40_4 452 493 IPR001680 GO:0005515
Vivi5g04428 639 SMART WD40_4 320 359 IPR001680 GO:0005515
Vivi5g04428 639 MobiDBLite consensus disorder prediction 145 166 - -
Vivi5g04428 639 Pfam WD domain, G-beta repeat 225 257 IPR001680 GO:0005515
Vivi5g04428 639 Pfam WD domain, G-beta repeat 281 317 IPR001680 GO:0005515
Vivi5g04428 639 Pfam WD domain, G-beta repeat 322 358 IPR001680 GO:0005515
Vivi5g04428 639 SUPERFAMILY WD40 repeat-like 223 496 IPR036322 GO:0005515
Vivi5g04428 639 MobiDBLite consensus disorder prediction 140 166 - -
Vivi5g04428 639 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 428 456 IPR000009 GO:0000159|GO:0019888
Vivi5g04428 639 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 237 257 IPR000009 GO:0000159|GO:0019888
Vivi5g04428 639 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 293 321 IPR000009 GO:0000159|GO:0019888
Vivi5g04428 639 Gene3D - 216 529 IPR015943 GO:0005515
Vivi5g04428 639 ProSiteProfiles Trp-Asp (WD) repeats profile. 226 267 IPR001680 GO:0005515
Vivi5g04428 639 PANTHER WD REPEAT DOMAIN 44 268 636 IPR040324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04428 Vivi-Chr5 142057374 142062144 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04428 220 390 Miscellaneous Gene Families AT5G08390 25.714 2.55e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04428 K20241 - gmx:100819135 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04428 5 142057374 142062144 Vivi5g04428 5 142057374 142062144 ECH
Vivi5g04428 5 142057374 142062144 Vivi3g02488 3 41579766 41585577 PCT