Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04426 ATGGTTAGAGACGATTTATACATCACGGTGCCGAGTTTATTCCGGTGTCCGATATCGCTTGACGTGATGAAATCTCCGGTGAGTCTCTGTACCGGAGTTACGTACGACCGTTCCAGCATCCAACGCTGGCTGGATAACGGTAACAACACTTGTCCGGCAACTATGCAGATTCTTCAAACGAAGGATTTCATACCTAATCGCACCTTACAGAGGCTCATCCAGATCTGGTCCGATTCAGTTCGTGACCGAGTCGACTCGCCTGATTCTCCTTTATCCGGTGACTCCTTTGATAAACGTGATCAGTTACTTGTCGCTTTGACCGATTTAGAGTCCGGGAGCGAGAACCGGTTTGACTCGCTGGAAAAAATCGTAAGGTTTGCGAAAGATTCCGAGGAGAATAGTGTTTTTCTGGCGAAAACAGAAGGTTTCGTGGCGTTGTTGGTAGGTTTTCTGGAAATTGTTGACGGTGGAGTGGAACGGAGTGTGGAGTTGCTTGAACAGGTTGTTATTGCGTTGGATTTGGTTCTAAGTAAAATTGAGAATCGCGAGTCGATTCTGAAGAACCAGAAGGAGAGGGAAGGAGAGAGTGTAGATTCATTGCTTCTAGTTTTGAAACAAGGAAGCTCCGAATCGAAGATTGCATCGATTAGGGTTTTGAAATCGATAGCCGATGATTTAGAATCCAAGCTTCTAATAGCGGAGAAGGAAGGTTTATTATCTCAATTACTCAACCTAATCACGCCGGAGAATGATGTAAACCTAATCGAGAACTCACTCTCGTGTCTGGTGGCAATTTCAACGCCGAAGAGGAACAAAGCGAAATTGATTCATCTCGGAGCAGTGAAAGTATTATCGAACATTCTAACATCAACTTCGAATTTGAGCGTTTCGGTAACTGAGAAGGTGTTGAAACTACTTGAAACGGTGTCGTCGATGAAAGAAGGGAGGTCGGAGATATGCGAAACTCCGTCCTGCGTGGCGGCGATAGCAAACAAAGTGTTGAAAGTGTCCGCCGTGGCGACGGAGCACGCGGTGACGATACTATGGAGTGTTTGTTATTTATTTCGTGATCAGAAAGCACAAGTAGCGGTTACGAAAGCTAACGGATTGACGAAGATTTTACTTCTGATGCAGAGTAATTGCACGCCACATGTTCGTCAAATGTCCGTGGATTTGCTTAAGATATTTCGTGTTAATTCTAAGTCGTGTCTTTCTTCGTATGACACTAAAACGACTCATATTATGCCGTTTTGA 1254 0.4466 MVRDDLYITVPSLFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQILQTKDFIPNRTLQRLIQIWSDSVRDRVDSPDSPLSGDSFDKRDQLLVALTDLESGSENRFDSLEKIVRFAKDSEENSVFLAKTEGFVALLVGFLEIVDGGVERSVELLEQVVIALDLVLSKIENRESILKNQKEREGESVDSLLLVLKQGSSESKIASIRVLKSIADDLESKLLIAEKEGLLSQLLNLITPENDVNLIENSLSCLVAISTPKRNKAKLIHLGAVKVLSNILTSTSNLSVSVTEKVLKLLETVSSMKEGRSEICETPSCVAAIANKVLKVSAVATEHAVTILWSVCYLFRDQKAQVAVTKANGLTKILLLMQSNCTPHVRQMSVDLLKIFRVNSKSCLSSYDTKTTHIMPF 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04426 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 86 IPR013083 -
Vivi5g04426 417 Gene3D - 180 406 IPR011989 -
Vivi5g04426 417 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Vivi5g04426 417 SUPERFAMILY ARM repeat 195 403 IPR016024 -
Vivi5g04426 417 Coils Coil 216 236 - -
Vivi5g04426 417 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Vivi5g04426 417 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Vivi5g04426 417 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Vivi5g04426 417 CDD RING-Ubox_PUB 11 63 IPR045210 -
Vivi5g04426 417 SUPERFAMILY RING/U-box 5 77 - -
Vivi5g04426 417 PANTHER WDSAM1 PROTEIN 9 405 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04426 Vivi-Chr5 141984281 141986372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04426 1 417 U-box Gene Family AT5G64660 54.801 2.51e-143 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04426 - - cam:101496984 653.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04426 5 141984281 141986372 Vivi5g04426 5 141984281 141986372 ECH
Vivi3g02492 3 41681786 41683490 Vivi5g04426 5 141984281 141986372 ECH
Vivi5g04426 5 141984281 141986372 Vivi3g02492 3 41681786 41683490 PCT