Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04421 ATGTTCTTGAGATTGATCCTACTTCTCGTTACATCAAGTTACAGAGCATTTGATGAGGTAAATGGGATTGAAGTTGCATGGGGCCAGGTTCAGATTGACGAGGTGTTGCAGTCACCGGGTGACTTAGATAGGCTATACTCAGAAGTGCATCTATTAAAATCTCTACGGCACAGTAACATAGTGAGGTTCTATAATTCTTGGATTGATGATAAGCGCAAGACTGTTAATATGATTACTGAGCTGTTTACGTCGGGTAGCCTCAAACAGTATCGGAAAAAACACAAGAAGGTTGACTTGAAGGCTGTCAAAGGATGGGCAAGACAGATTCTGATGGGTTTAAACTACCTACACAGTCACAACCCACCAATTATACACAGGGACTTGAAATGTGATAATATATTTATTAATGGTCACCAAGGAGAAGTTAAAATTGGTGATTTGGGGCTGGCGACTCTCTTGACTCAGCCTAATGCTAAGAGTGTGATCGGAACTCCGGAGTTTATGGCACCTGAAATGTATGATGAGAATTACAACGAATTAGCTGACATATACTCATTTGGTATGTGCATGCTTGAGTTGGTGACTTCTGAGTATCCTTACAGTGAATGCAGAAATTCAGCGCAGATATACAAGAAAGTTTCATCTGGTATAAAGCCTGTTGCTCTTTCTAAAGTGGTAGATCCCGAGATAAAATCATTTATTGAAAAATGTCTTGTTCCAGCCTCCCAAAGAATGTCAGCAAAGGAGCTTCTGATGGACCCCTTTGTTCAAGTGAATGGTTCCGCAAAGAATATTTCTTTTCCATTGCCTGATATTGTTCTTCCCAAACTGGGAGCCTCTGAAAACAGAGGTATGATATCAGAAGGTCCTGCTAGTACACGTATCAGGGCTATTTCTATGAATCTTGGTGACCCTAACGAGCTACCTGTGATTACTGTACTTGATAATTCCACTGTCGATGCATCATCTTCTCCAAGTGTCGAGATAAGAAGGTTGAAGGGTGGTGATACCTTCTTTCTAAAAGGTGATCAAAATGATGAGAATTCTGTATCATTAGTTCTTCGGATAGCTGATCAGAATGGACAAGTAAGAAATATCCATTTCATCTTCTACCTTGACAGTGACACTGCTGTCTCAGTTTCAAAGGAAATGGTTGAGCAACTTGAACTTGCTGATCAGAACGTAATATTTATAGCTGAGTTAATCGATTTGTTATTGATGAAATTGATTCCTGAGTGGAAACCTTGTGTAGCAATCGATCATTTAGCCTCTGTAAATGGTAAATGGACTAATGCTAGCCAACAGAGAGATGCGGAGTTGGATAAAGACAAAGGAAGCTCAAAATATTCCAGTGAAGATTCAGGACCCTCAACCTCATACGGAACAACAGCTGCAAAAGAGAACGTCGACAATATGGATTTATGTTCTGAGATGTCATATGCTTCTGCAACATCAGACATCAATGATAAGTTTTCTATGGTTTCATTCATGTCTGCTGAATCAGGATTTGATGGAGGCAGTCAGACCTCATTTGCGTCTGAAACCGGGACATCATCTGATCATAAGAGCAAGATTTTAGACATGGGAAGCAACAGTATGATGAGCTTCTCAAGTTATCCTCTTGATGTTTCTTCCTTGTCCGACCTCGATGATGACTTGAGAGTAGAGATAGAAATGATTGAACAGCAATATCAAGAAGCAATTAAAGACTTATCAAAAAAAAGAAACATGGCCATCGAGGAGATTAAAAAGAGAATGGCAGAGAAGAATGATTTCAGTTCAAAGTAG 1788 0.3977 MFLRLILLLVTSSYRAFDEVNGIEVAWGQVQIDEVLQSPGDLDRLYSEVHLLKSLRHSNIVRFYNSWIDDKRKTVNMITELFTSGSLKQYRKKHKKVDLKAVKGWARQILMGLNYLHSHNPPIIHRDLKCDNIFINGHQGEVKIGDLGLATLLTQPNAKSVIGTPEFMAPEMYDENYNELADIYSFGMCMLELVTSEYPYSECRNSAQIYKKVSSGIKPVALSKVVDPEIKSFIEKCLVPASQRMSAKELLMDPFVQVNGSAKNISFPLPDIVLPKLGASENRGMISEGPASTRIRAISMNLGDPNELPVITVLDNSTVDASSSPSVEIRRLKGGDTFFLKGDQNDENSVSLVLRIADQNGQVRNIHFIFYLDSDTAVSVSKEMVEQLELADQNVIFIAELIDLLLMKLIPEWKPCVAIDHLASVNGKWTNASQQRDAELDKDKGSSKYSSEDSGPSTSYGTTAAKENVDNMDLCSEMSYASATSDINDKFSMVSFMSAESGFDGGSQTSFASETGTSSDHKSKILDMGSNSMMSFSSYPLDVSSLSDLDDDLRVEIEMIEQQYQEAIKDLSKKRNMAIEEIKKRMAEKNDFSSK 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04421 595 ProSiteProfiles Protein kinase domain profile. 1 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04421 595 Coils Coil 550 581 - -
Vivi5g04421 595 SMART serkin_6 5 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04421 595 Gene3D - 348 427 - -
Vivi5g04421 595 MobiDBLite consensus disorder prediction 434 465 - -
Vivi5g04421 595 FunFam Probable serine/threonine-protein kinase WNK1 9 80 - -
Vivi5g04421 595 SUPERFAMILY Protein kinase-like (PK-like) 14 307 IPR011009 -
Vivi5g04421 595 Pfam Protein kinase domain 14 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04421 595 CDD STKc_WNK 14 255 - -
Vivi5g04421 595 Gene3D Phosphorylase Kinase; domain 1 10 80 - -
Vivi5g04421 595 MobiDBLite consensus disorder prediction 435 449 - -
Vivi5g04421 595 MobiDBLite consensus disorder prediction 450 465 - -
Vivi5g04421 595 Gene3D Transferase(Phosphotransferase) domain 1 82 263 - -
Vivi5g04421 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Vivi5g04421 595 FunFam probable serine/threonine-protein kinase WNK9 82 261 - -
Vivi5g04421 595 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 13 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04421 Vivi-Chr5 141892353 141895728 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04421 99 422 MAP Kinase Kinase Kinase AT1G49160 68.519 2.93e-164 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vivi5g04421 Pkinase 3.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04421 K08867 - gmx:121175054 768.074