Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04420 ATGAGTTTGGGGGGTACGGAAAGCTCGGAAGAGGGTGCAGTGCATCCGGAGCCACCTGATCCTGATGTTCTTGAGATTGATCCTACTTCTCGTTACATCAAGTATAAAGAAGTGATCGGCAAAGGCGCCTTCAAAACTGTTTACAGAGCATTTGATGAGGTAAATGGGATTGAAGTTGCATGGGGCCAGGTTCAGATTGACGAGGTGTTGCAGTCACCGGGTGACTTAGATAGGCTATACTCAGAAGTGCATCTATTAAAATCTCTACGGCACAGTAACATAGTGAGGTTCTATAATTCTTGGATTGATGATAAGCGCAAGACTGTTAATATGATTACTGAGCTGTTTACGTCGGGTAGCCTCAAACAGTATCGGAAAAAACACAAGAAGGTTGACTTGAAGGCTGTCAAAGGATGGGCAAGACAGATTCTGATGGGTTTAAACTACCTACACAGTCACAACCCACCAATTATACACAGGGACTTGAAATGTGATAATATATTTATTAATGGTCACCAAGGAGAAGTTAAAATTGGTGATTTGGGGCTGGCGACTCTCTTGACTCAGCCTAATGCTAAGAGTGTGATCGGAACTCCGGAGTTTATGGCACCTGAAATGTATGATGAGAATTACAACGAATTAGCTGACATATACTCATTTGGTATGTGCATGCTTGAGTTGGTGACTTCTGAGTATCCTTACAGTGAATGCAGAAATTCAGCGCAGATATACAAGAAAGTTTCATCTGGTATAAAGCCTGTTGCTCTTTCTAAAGTGGTAGATCCCGAGATAAAATCATTTATTGAAAAATGTCTTGTTCCAGCCTCCCAAAGAATGTCAGCAAAGGAGCTTCTGATGGACCCCTTTGTTCAAGTGAATGGTTCCGCAAAGAATATTTCTTTTCCATTGCCTGATATTGTTCTTCCCAAACTGGGAGCCTCTGAAAACAGAGGTATGATATCAGAAGGTCCTGCTAGTACACGTATCAGGGCTATTTCTATGAATCTTGGTGACCCTAACGAGCTACCTGTGATTACTGTACTTGATAATTCCACTGTCGATGCATCATCTTCTCCAAGTGTCGAGATAAGAAGGTTGAAGGGTGGTGATACCTTCTTTCTAAAAGGTGATCAAAATGATGAGAATTCTGTATCATTAGTTCTTCGGATAGCTGATCAGAATGGACAAGTAAGAAATATCCATTTCATCTTCTACCTTGACAGTGACACTGCTGTCTCAGTTTCAAAGGAAATGGTTGAGCAACTTGAACTTGCTGATCAGAACGTAATATTTATAGCTGAGTTAATCGATTTGTTATTGATGAAATTGATTCCTGAGTGGAAACCTTGTGTAGCAATCGATCATTTAGCCTCTGTAAATGGTAAATGGACTAATGCTAGCCAACAGAGAGATGCGGAGTTGGATAAAGACAAAGGAAGCTCAAAATATTCCAGTGAAGATTCAGGACCCTCAACCTCATACGGAACAACAGCTGCAAAAGAGAACGTCGACAATATGGATTTATGTTCTGAGATGTCATATGCTTCTGCAACATCAGACATCAATGATAAGTTTTCTATGGTTTCATTCATGTCTGCTGAATCAGGATTTGATGGAGGCAGTCAGACCTCATTTGCGTCTGAAACCGGGACATCATCTGATCATAAGAGCAAGATTTTAGACATGGGAAGCAACAGTATGATGAGCTTCTCAAGTTATCCTCTTGATGTTTCTTCCTTGTCCGACCTCGATGATGACTTGAGAGTAGAGATAGAAATGATTGAACAGCAATATCAAGAAGCAATTAAAGACTTATCAAAAAAAAGAAACATGGCCATCGAGGAGATTAAAAAGAGAATGGCAGAGAAGAATGATTTCAGTTCAAAGTAG 1890 0.4048 MSLGGTESSEEGAVHPEPPDPDVLEIDPTSRYIKYKEVIGKGAFKTVYRAFDEVNGIEVAWGQVQIDEVLQSPGDLDRLYSEVHLLKSLRHSNIVRFYNSWIDDKRKTVNMITELFTSGSLKQYRKKHKKVDLKAVKGWARQILMGLNYLHSHNPPIIHRDLKCDNIFINGHQGEVKIGDLGLATLLTQPNAKSVIGTPEFMAPEMYDENYNELADIYSFGMCMLELVTSEYPYSECRNSAQIYKKVSSGIKPVALSKVVDPEIKSFIEKCLVPASQRMSAKELLMDPFVQVNGSAKNISFPLPDIVLPKLGASENRGMISEGPASTRIRAISMNLGDPNELPVITVLDNSTVDASSSPSVEIRRLKGGDTFFLKGDQNDENSVSLVLRIADQNGQVRNIHFIFYLDSDTAVSVSKEMVEQLELADQNVIFIAELIDLLLMKLIPEWKPCVAIDHLASVNGKWTNASQQRDAELDKDKGSSKYSSEDSGPSTSYGTTAAKENVDNMDLCSEMSYASATSDINDKFSMVSFMSAESGFDGGSQTSFASETGTSSDHKSKILDMGSNSMMSFSSYPLDVSSLSDLDDDLRVEIEMIEQQYQEAIKDLSKKRNMAIEEIKKRMAEKNDFSSK 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04420 629 SMART serkin_6 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04420 629 Gene3D Transferase(Phosphotransferase) domain 1 116 297 - -
Vivi5g04420 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Vivi5g04420 629 FunFam probable serine/threonine-protein kinase WNK9 116 295 - -
Vivi5g04420 629 MobiDBLite consensus disorder prediction 1 26 - -
Vivi5g04420 629 MobiDBLite consensus disorder prediction 484 499 - -
Vivi5g04420 629 MobiDBLite consensus disorder prediction 469 483 - -
Vivi5g04420 629 ProSiteProfiles Protein kinase domain profile. 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04420 629 SUPERFAMILY Protein kinase-like (PK-like) 35 341 IPR011009 -
Vivi5g04420 629 CDD STKc_WNK 31 289 - -
Vivi5g04420 629 FunFam Probable serine/threonine-protein kinase WNK1 18 114 - -
Vivi5g04420 629 Gene3D Phosphorylase Kinase; domain 1 19 114 - -
Vivi5g04420 629 MobiDBLite consensus disorder prediction 468 499 - -
Vivi5g04420 629 Coils Coil 584 615 - -
Vivi5g04420 629 Pfam Protein kinase domain 35 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04420 629 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 20 622 - -
Vivi5g04420 629 Gene3D - 382 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04420 Vivi-Chr5 141892353 141895728 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04420 20 623 MAP Kinase Kinase Kinase AT5G41990 47.020 1.74e-174 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vivi5g04420 Pkinase 4.2e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04420 K08867 - gmx:121175054 836.639