Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04418 ATGAGTTTGGGGGGTACGGAAAGCTCGGAAGAGGGTGCAGTGCATCCGGAGCCACCTGATCCTGATGTTCTTGAGATTGATCCTACTTCTCGTTACATCAAGTATAAAGAAGTGATCGGCAAAGGCGCCTTCAAAACTGTTTACAGAGCATTTGATGAGGTAAATGGGATTGAAGTTGCATGGGGCCAGGTTCAGATTGACGAGGTGTTGCAGTCACCGGGTGACTTAGATAGGCTATACTCAGAAGTGCATCTATTAAAATCTCTACGGCACAGTAACATAGTGAGGTTCTATAATTCTTGGATTGATGATAAGCGCAAGACTGTTAATATGATTACTGAGCTGTTTACGTCGGGTAGCCTCAAACAGTATCGGAAAAAACACAAGAAGGTTGACTTGAAGGCTGTCAAAGGATGGGCAAGACAGATTCTGATGGGTTTAAACTACCTACACAGTCACAACCCACCAATTATACACAGGGACTTGAAATGTGATAATATATTTATTAATGGTCACCAAGGAGAAGTTAAAATTGGTGATTTGGGGCTGGCGACTCTCTTGACTCAGCCTAATGCTAAGAGTGTGATCGGAACTCCGGAGTTTATGGCACCTGAAATGTATGATGAGAATTACAACGAATTAGCTGACATATACTCATTTGGTATGTGCATGCTTGAGTTGGTGACTTCTGAGTATCCTTACAGTGAATGCAGAAATTCAGCGCAGATATACAAGAAAGTTTCATCTGGTATAAAGCCTGTTGCTCTTTCTAAAGTGGTAGATCCCGAGATAAAATCATTTATTGAAAAATGTCTTGTTCCAGCCTCCCAAAGAATGTCAGCAAAGGAGCTTCTGATGGACCCCTTTGTTCAAGTGAATGGTTCCGCAAAGAATATTTCTTTTCCATTGCCTGATATTGTTCTTCCCAAACTGGGAGCCTCTGAAAACAGAGGTATGATATCAGAAGGTCCTGCTAGTACACGTATCAGGGCTATTTCTATGAATCTTGGTGACCCTAACGAGCTACCTGTGATTACTGTACTTGATAATTCCACTGTCGATGCATCATCTTCTCCAAGTGTCGAGATAAGAAGGTTGAAGGGTGGTGATACCTTCTTTCTAAAAGGACAAGTAAGAAATATCCATTTCATCTTCTACCTTGACAGTGACACTGCTGTCTCAGTTTCAAAGGAAATGGTTGAGCAACTTGAACTTGCTGATCAGAACGTAATATTTATAGCTGAGTTAATCGATTTGTTATTGATGAAATTGATTCCTGAGTGGAAACCTTGTGTAGCAATCGATCATTTAGCCTCTGTAAATGGTAAATGGACTAATGCTAGCCAACAGAGAGATGCGGAGTTGGATAAAGACAAAGGAAGCTCAAAATATTCCAGTGAAGATTCAGGACCCTCAACCTCATACGGAACAACAGCTGCAAAAGAGAACGTCGACAATATGGATTTATGTTCTGAGATGTCATATGCTTCTGCAACATCAGACATCAATGATAAGTTTTCTATGGTTTCATTCATGTCTGCTGAATCAGGATTTGATGGAGGCAGTCAGACCTCATTTGCGTCTGAAACCGGGACATCATCTGATCATAAGAGCAAGATTTTAGACATGGGAAGCAACAGTATGATGAGCTTCTCAAGTTATCCTCTTGATGTTTCTTCCTTGTCCGACCTCGATGATGACTTGAGAGTAGAGATAGAAATGATTGAACAGCAATATCAAGAAGCAATTAAAGACTTATCAAAAAAAAGAAACATGGCCATCGAGGAGATTAAAAAGAGAATGGCAGAGAAGAATGATTTCAGTTCAAAGTAG 1833 0.4064 MSLGGTESSEEGAVHPEPPDPDVLEIDPTSRYIKYKEVIGKGAFKTVYRAFDEVNGIEVAWGQVQIDEVLQSPGDLDRLYSEVHLLKSLRHSNIVRFYNSWIDDKRKTVNMITELFTSGSLKQYRKKHKKVDLKAVKGWARQILMGLNYLHSHNPPIIHRDLKCDNIFINGHQGEVKIGDLGLATLLTQPNAKSVIGTPEFMAPEMYDENYNELADIYSFGMCMLELVTSEYPYSECRNSAQIYKKVSSGIKPVALSKVVDPEIKSFIEKCLVPASQRMSAKELLMDPFVQVNGSAKNISFPLPDIVLPKLGASENRGMISEGPASTRIRAISMNLGDPNELPVITVLDNSTVDASSSPSVEIRRLKGGDTFFLKGQVRNIHFIFYLDSDTAVSVSKEMVEQLELADQNVIFIAELIDLLLMKLIPEWKPCVAIDHLASVNGKWTNASQQRDAELDKDKGSSKYSSEDSGPSTSYGTTAAKENVDNMDLCSEMSYASATSDINDKFSMVSFMSAESGFDGGSQTSFASETGTSSDHKSKILDMGSNSMMSFSSYPLDVSSLSDLDDDLRVEIEMIEQQYQEAIKDLSKKRNMAIEEIKKRMAEKNDFSSK 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04418 610 FunFam Probable serine/threonine-protein kinase WNK1 18 114 - -
Vivi5g04418 610 SMART serkin_6 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04418 610 Pfam Protein kinase domain 35 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04418 610 SUPERFAMILY Protein kinase-like (PK-like) 35 342 IPR011009 -
Vivi5g04418 610 MobiDBLite consensus disorder prediction 465 480 - -
Vivi5g04418 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Vivi5g04418 610 MobiDBLite consensus disorder prediction 1 26 - -
Vivi5g04418 610 ProSiteProfiles Protein kinase domain profile. 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04418 610 CDD STKc_WNK 31 289 - -
Vivi5g04418 610 MobiDBLite consensus disorder prediction 450 464 - -
Vivi5g04418 610 Coils Coil 565 596 - -
Vivi5g04418 610 Gene3D Phosphorylase Kinase; domain 1 19 114 - -
Vivi5g04418 610 FunFam probable serine/threonine-protein kinase WNK9 116 295 - -
Vivi5g04418 610 Gene3D Transferase(Phosphotransferase) domain 1 116 297 - -
Vivi5g04418 610 MobiDBLite consensus disorder prediction 449 480 - -
Vivi5g04418 610 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 20 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04418 Vivi-Chr5 141892346 141895728 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04418 20 604 MAP Kinase Kinase Kinase AT5G41990 45.530 2.77e-163 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vivi5g04418 Pkinase 3.9e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04418 K08867 - gmx:121175054 793.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04418 5 141892346 141895728 Vivi5g04418 5 141892346 141895728 ECH
Vivi5g04418 5 141892346 141895728 Vivi3g02494 3 41727261 41730495 PCT