Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04415 ATGAATGTGATGGATTATGATCAATTTGATTACTGTTTCACCCCTCTATTTTTCCAAACAGAAGATATCTTATCTCCAAATACAATCCTAAATGAAATATTATTTGATCAAGAAGATCAATCACAATATCTCTTATCTCCAAATATAATCATAGATGAGATCTTTGATCAAGAAAAGTCCATAGAAAGATTGTTGCAGCAACATACAAATCACGACGAGACAGTGCCTCTCGAGAATGAATTGTGTCGAGGAACTCCTGAAAAAGGCTGCGAAAACGTGATTGGTTTGAACGAGGAGGATTCTTTTTGGAAGGAAGTTCAAGATGAGTTAATGGAAGAGACAAGTCTAGTTGATCTTTTGCTGATAGGAGCTGAAGCTGTTGAATCACAGAACATGGCACTTGCTTCTGACATAATCGAAAAACTAAACAATGCGGCGTTATTAGAAAACGGCGATAGTTTATTGAACAGGTTGTGTCCTTTCTTTACACAAGGTTTGTTTTACAAAACTACAAATGCTCCTAAATTCCATTGTGATCATGTTTCTACACAGACAAGCACATTCTTTGCGTTTCAGATACTTCAAGAACTCTCTCCGTACGTAAAATTTGCTCATTTCACAGCAAACCAAGCAATTTTCGAAGCAACAGACAGTGCTCAACATGTTCATGTCATTGATTTCGATATCATGGAGGGAATCCAATGGCCATCGTTGATGGTTGACTTTGCAATGAGAAAGAACACTGCGTCACTTAGAGTAACAGCAATCACAGTAGATCAGCAAAGTGCAGCCTCGGTTCAACAAACAGGAAGAAGGCTAAAAGAGTTCGCGGATTCGATCAATTTCCCTTTCGTGTTCGATACGATGATGATGGCGAGCGAAGAAGACTTTCAAAGAATCGAACTCGGTGACACGCTTATTGTCAATTGTATGATACATCAATGGATGCCAAACAGAAGTTTCTCATTGGTCAAAACTTTTCTTGACGGTGTAAGAAAATTATCGCCGAAACTTGTCGTGTTAGTTGAAGAAGAACTGTTTAATTTTTCTAGACTCAAATCCATGTCGTTTGTGGAGTTTTTCTGTGAGGCTTTGCATCACTATATTGCACTTTGTGATTCATTGGTTACTACTCTTTGGGGTAGTCATAAGATGGAGTTAAGCCTTATAGAGAAAGATGTGTTGGGAGTGAGAATCTTGGACAGTGTAAGACAATTTCCTTGTGAAAGAGAGGAGAGAATGTTGTGGGAAGAAAAGTTTTTTTATTCACTGAAAGGGTACAAAAGAGTTGGTATGAGTACATATAATATTTCACAGGCTAAGTTCTTGGTAAGCTTGTTTGGTAAAGGGTATTGGGTGCAATTTGAGAATTTTAGGTTGGCTTTAAGTTGGAAGTCAAGACCTTTGACTTCAGTTTCAATCTGGGTACCAATAGATTCTATGAGTGACAGGGTCAATTAG 1461 0.3792 MNVMDYDQFDYCFTPLFFQTEDILSPNTILNEILFDQEDQSQYLLSPNIIIDEIFDQEKSIERLLQQHTNHDETVPLENELCRGTPEKGCENVIGLNEEDSFWKEVQDELMEETSLVDLLLIGAEAVESQNMALASDIIEKLNNAALLENGDSLLNRLCPFFTQGLFYKTTNAPKFHCDHVSTQTSTFFAFQILQELSPYVKFAHFTANQAIFEATDSAQHVHVIDFDIMEGIQWPSLMVDFAMRKNTASLRVTAITVDQQSAASVQQTGRRLKEFADSINFPFVFDTMMMASEEDFQRIELGDTLIVNCMIHQWMPNRSFSLVKTFLDGVRKLSPKLVVLVEEELFNFSRLKSMSFVEFFCEALHHYIALCDSLVTTLWGSHKMELSLIEKDVLGVRILDSVRQFPCEREERMLWEEKFFYSLKGYKRVGMSTYNISQAKFLVSLFGKGYWVQFENFRLALSWKSRPLTSVSIWVPIDSMSDRVN 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04415 486 ProSiteProfiles GRAS family profile. 107 476 IPR005202 -
Vivi5g04415 486 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 106 471 IPR005202 -
Vivi5g04415 486 Pfam GRAS domain family 116 475 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04415 Vivi-Chr5 141888041 141889681 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04415 116 475 GRAS Transcription Factor Family AT5G41920 33.065 2.33e-44 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vivi5g04415 GRAS 7.7e-77 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04415 - - gmx:100804613 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04415 5 141888041 141889681 Vivi5g04415 5 141888041 141889681 ECH