Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04410 ATGTATGCTTCTACTTCCTTTACTTCACCACTCCTCCACGAGCTTCTTGTGGAATCTCACACAAGAAGGTTACTCATCCAAGGCCCAATTGATAATCAACCACTAAACAACCATAATTTTGGAGTTCCTGAATTTGATTTAAATACTCTGATGATAGTTGGAGTCCTATTATGTGCTCTAATTTGCTCACTTGCATTAAACTCCATCATAAGGTGTGCCTTGAGATTTTCGAACCAAGCCATCAACGATAACGCTTCTTCAAGTTCAAGTAGCAACAGTTTACCTCAATTGGCTAATAAAGGAATCAAGAAGAAAGCTCTCAAAACCTTTCACACAGTGAGCTATTCAACTGAGTTGAAACTGCCTGGTTTGGATATAGAGTGTGTGATATGTCTCTCAGAGTTTGCAAAAGGTGAAAAGGTACGCATATTGCCTAAATGCAACCATGGTTTTCATGTTCGTTGCATTGACAAATGGCTAAGGGAACACTCATCATGTCCCAAGTGCAGACAATGTCTTCTTCAAACATGTAGAAAGGTTGGTGATTCGCAGGTGCAGCCAATTGTGCTGCCAGTACCGGAAACCATTACCAGGATTCAACCACTAGACCATGAAGCCGTTGAACGTAGCTATAGGGAAGAAAGCGGATAA 651 0.4101 MYASTSFTSPLLHELLVESHTRRLLIQGPIDNQPLNNHNFGVPEFDLNTLMIVGVLLCALICSLALNSIIRCALRFSNQAINDNASSSSSSNSLPQLANKGIKKKALKTFHTVSYSTELKLPGLDIECVICLSEFAKGEKVRILPKCNHGFHVRCIDKWLREHSSCPKCRQCLLQTCRKVGDSQVQPIVLPVPETITRIQPLDHEAVERSYREESG 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04410 216 SUPERFAMILY RING/U-box 106 176 - -
Vivi5g04410 216 Pfam Ring finger domain 127 170 IPR001841 -
Vivi5g04410 216 CDD RING-H2_EL5-like 127 170 - -
Vivi5g04410 216 PANTHER RING-H2 FINGER PROTEIN ATL78 32 206 IPR044602 GO:0016567|GO:0016740
Vivi5g04410 216 FunFam RING-H2 finger protein ATL73 86 175 - -
Vivi5g04410 216 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Vivi5g04410 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 174 IPR013083 -
Vivi5g04410 216 SMART ring_2 128 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04410 Vivi-Chr5 141825076 141825965 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04410 23 174 C3H Transcription Factor Family AT3G10910 46.626 3.59e-40 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04410 K19040 - gmx:100780127 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04410 5 141825076 141825965 Vivi3g02500 3 41836751 41837721 PCT