Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04409 ATGTATGCTTCTACTTCCTTTACTTCACAGCTCTTCCATGAGCTTCTTGTGGATTCTCACACAAGAAGGCTACTCTTCCAAAACCCTGCTGATCATCGATCACTGACCAACTCTCCTATTCTAACAAACAACCATAATTCTACAAACTCATATTTCGGAATTCGTCAATTTGATTCAAATGTTGTAATGATACTTGCAGTCCTACTGTGTGCTCTTGTTTGCTCTCTTGCATTAAACTCCATCATAAGATGTGCCTTGAGGTTTTCAATCAACAACCAAGCTTCTTCGAGTTCAAGTAACAACGCTTCACAACAATTGGCCAACAAAGGAATAAAGAAGAAGGCTCTCAAAACATTCCCAACAGTGAGTTATTCAACTGACTTGAAATTACCAGGTTTGGATAGGGAGTGTGTTATATGTCTCTCAGAGTTTGCAAAGGGTGAAAAGGTGCGGATTTTGCCTAAATGCAACCATGGTTTTCATGTTCGCTGCATTGACAAATGGCTAAAGGAACACTCATCATGTCCCAAGTGCAGACAATGTCTTCTTCAAACATGTCGAAAGATTGTTGGATTAGAAGCACAACCTGTATTGCCGGTGCCAGAAACTATTATAAGAATTCAACCACTAGAACATGAAGCTGTTGAACGTAACTATAGAGAAGAAAGCAGATAA 675 0.3941 MYASTSFTSQLFHELLVDSHTRRLLFQNPADHRSLTNSPILTNNHNSTNSYFGIRQFDSNVVMILAVLLCALVCSLALNSIIRCALRFSINNQASSSSSNNASQQLANKGIKKKALKTFPTVSYSTDLKLPGLDRECVICLSEFAKGEKVRILPKCNHGFHVRCIDKWLKEHSSCPKCRQCLLQTCRKIVGLEAQPVLPVPETIIRIQPLEHEAVERNYREESR 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04409 224 CDD RING-H2_EL5-like 136 179 - -
Vivi5g04409 224 PANTHER RING-H2 FINGER PROTEIN ATL78 17 214 IPR044602 GO:0016567|GO:0016740
Vivi5g04409 224 Pfam Ring finger domain 136 179 IPR001841 -
Vivi5g04409 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 183 IPR013083 -
Vivi5g04409 224 SMART ring_2 137 178 IPR001841 -
Vivi5g04409 224 SUPERFAMILY RING/U-box 115 184 - -
Vivi5g04409 224 FunFam RING-H2 finger protein ATL73 96 184 - -
Vivi5g04409 224 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04409 Vivi-Chr5 141817577 141819541 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04409 57 183 C3H Transcription Factor Family AT3G10910 54.412 4.65e-44 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04409 K19040 - gmx:100780127 299.286