Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04408 ATGTACGCTTCTGTTTCCTTTACTTCCCAACTCTTCCATGAGCTTCTTGTTGATTCTCACACAAGAAGGCTACTCTTTCAAGGCCCAATTGATAATCAACCACTAAACAACCACAATTCAACCGACTCGTATTTTGGAGTTCGTGAATTTGATTCAAATGTTGTGATGGTACTTGCAGTCCTATTGTGTGCTTTTATTTGCTCCCTTGTATTAAACTCCATCATAAGATGTGCCCTGAGGTTTTCAAATGCAGCCATCAACAACAACAACAACCAAGCTTCACAATTATTGGCCAATAAAGGAATCAAGAAGAAAGCTCTCAAAACATTCACCACGGTGAACTATTCAACCGAGTTGAAACTTGGTTTGGATACGGAGTGTGTGATATGTCTCTCAGAGTTTACAAAGGGCGAAAAGGTGCGCATTTTGCCTAAATGCAACCATGGTTTTCATGTTCGTTGCATTGACAAATGGCTAAAGGAACACTCATCGTGTCCCAAGTGTAGACAATGTCTTCTTGAAATATGTCGAAAGGTTGGTGAGTCGCAGGTGCAACCAATTGTGGTGCCAGAGCCGGAAATCATTCTAAGGATTGAACCACTAGACCATGAAGCTGTTGAACATAACTATAGGGAAGAAAGAAGATAA 648 0.4074 MYASVSFTSQLFHELLVDSHTRRLLFQGPIDNQPLNNHNSTDSYFGVREFDSNVVMVLAVLLCAFICSLVLNSIIRCALRFSNAAINNNNNQASQLLANKGIKKKALKTFTTVNYSTELKLGLDTECVICLSEFTKGEKVRILPKCNHGFHVRCIDKWLKEHSSCPKCRQCLLEICRKVGESQVQPIVVPEPEIILRIEPLDHEAVEHNYREERR 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04408 215 CDD RING-H2_EL5-like 126 169 - -
Vivi5g04408 215 FunFam RING-H2 finger protein ATL73 87 174 - -
Vivi5g04408 215 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Vivi5g04408 215 PANTHER RING-H2 FINGER PROTEIN ATL78 20 205 IPR044602 GO:0016567|GO:0016740
Vivi5g04408 215 Pfam Ring finger domain 126 169 IPR001841 -
Vivi5g04408 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 173 IPR013083 -
Vivi5g04408 215 SUPERFAMILY RING/U-box 118 175 - -
Vivi5g04408 215 SMART ring_2 127 168 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04408 Vivi-Chr5 141798756 141801416 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04408 23 173 C3H Transcription Factor Family AT3G10910 48.447 1.46e-43 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04408 K19040 - gmx:100780127 278.87