Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04407 ATGTATGCTTCTACTTCCTTTACTTCACAGCTCTTCCATGAGCTTCTTGTTGATTCTCACACAAGAAGGCTACTCTTTCAAGGCCCGATTGATAATCAACCACTAAACAACCACAACTCAACCGACTCGTATTTTGGAGTTCGTGAATTTGATTCAAACGTTGTGATGGTACTTGCAGTCCTATTGTGTGCTTTTATTTGTTCCCTTGTATTGAACTCCATCATAAGATGTGCATTAAGGTTTTCAAATGTAGCCATCAACAACAGCTCTTCTTCGAGTTCGAGCAGCAACCCTTCACCTCAACTGGTTAACAAAGGAATCAAGAAGAAGGCTCTCAAGACATTCCCAACAGTGAGTTATTCAACCGAGCTGAAATTACCAAGTTTGGATACGGAGTGTGTGATATGTCTCTCAGAGTTTGCAATGGGTGAAAAGGTACGCATATTGCCGAAATGCAACCATGGTTTTCATGTTCGTTGCATTGACAAATGGCTAAAGGAACACTCATCATGTCCCAAGTGCAGACAATGTCTTCTTCAAACATGTAGAAAGGTTGGTGAATCGCAGGTGCAACCAATTGTGCTGCCAGTACCGGAAACCATTATCAGGATTCAACCACTAAACCATGAAGCTGTGGAACGTAACTATAGGGAAGAAAGAAGATAA 666 0.4144 MYASTSFTSQLFHELLVDSHTRRLLFQGPIDNQPLNNHNSTDSYFGVREFDSNVVMVLAVLLCAFICSLVLNSIIRCALRFSNVAINNSSSSSSSSNPSPQLVNKGIKKKALKTFPTVSYSTELKLPSLDTECVICLSEFAMGEKVRILPKCNHGFHVRCIDKWLKEHSSCPKCRQCLLQTCRKVGESQVQPIVLPVPETIIRIQPLNHEAVERNYREERR 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04407 221 CDD RING-H2_EL5-like 132 175 - -
Vivi5g04407 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 179 IPR013083 -
Vivi5g04407 221 FunFam RING-H2 finger protein ATL73 90 180 - -
Vivi5g04407 221 SUPERFAMILY RING/U-box 111 180 - -
Vivi5g04407 221 SMART ring_2 133 174 IPR001841 -
Vivi5g04407 221 Pfam Ring finger domain 132 175 IPR001841 -
Vivi5g04407 221 PANTHER RING-H2 FINGER PROTEIN ATL78 20 211 IPR044602 GO:0016567|GO:0016740
Vivi5g04407 221 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04407 Vivi-Chr5 141796480 141797430 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04407 23 179 C3H Transcription Factor Family AT3G10910 46.875 3.06e-43 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04407 K19040 - gmx:100780127 316.235