Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04405 ATGTATGCTTCTACTTCCTTTACTTCACAACATGTCCATGACATTCTTGTAGAAGCTCACTCAAGAAGGCTACTCTTCCAAAATCCAATTGATCATCAATCACTTAAAATCAACTCTCCTGTTTTTACAAACAACCACAATTCAACCGACTCGTATTTTGGAAGCACCGAATTTGGTTCAAATGTTGTGATGATAATTGCAATCATATTATGTGTGTTTATTTTTTCACTTGCATTAAACTCCATCATAAGGTGTGCTTGTGCCTTAAGGATTTCAAACGTAGCCAACAACAGTAACGAGTCTTCTTCGAGTAGCAGCTCTTCATCTCAAGTGGCTAAAAAAGGAATCAAGAAAAAAGCTCTTAAGAAATTCCCAAAAGTGACTTATTCAACTGAGTTGAAACTACCAGGTTTGGATACTGAGTGTGTGATATGTCTCTCCGAGTTTACAAACGGTGAAAAAGTGCGCATTTTACCTAAATGCAACCATGGTTTTCATGTTCGTTGCATTGACAAATGGTTAAAGGAACACCCATCATGTCCCAAGTGTAGACAATGTGTTCTTGAAACTTGTAGAAAGATTGGTGGGTCGCAGGTGCAACCGATTTTGTTGCCAGTGCCAGAAATTATTATACAGATCCAACCACTAGATCCTGAAATTTTGGAGCGTAATTATAGAGAAATATAA 687 0.3741 MYASTSFTSQHVHDILVEAHSRRLLFQNPIDHQSLKINSPVFTNNHNSTDSYFGSTEFGSNVVMIIAIILCVFIFSLALNSIIRCACALRISNVANNSNESSSSSSSSSQVAKKGIKKKALKKFPKVTYSTELKLPGLDTECVICLSEFTNGEKVRILPKCNHGFHVRCIDKWLKEHPSCPKCRQCVLETCRKIGGSQVQPILLPVPEIIIQIQPLDPEILERNYREI 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04405 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 188 IPR013083 -
Vivi5g04405 228 FunFam RING-H2 finger protein ATL73 101 189 - -
Vivi5g04405 228 SUPERFAMILY RING/U-box 120 190 - -
Vivi5g04405 228 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Vivi5g04405 228 CDD RING-H2_EL5-like 141 184 - -
Vivi5g04405 228 PANTHER RING-H2 FINGER PROTEIN ATL78 16 219 IPR044602 GO:0016567|GO:0016740
Vivi5g04405 228 Pfam Ring finger domain 141 184 IPR001841 -
Vivi5g04405 228 SMART ring_2 142 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04405 Vivi-Chr5 141768999 141769963 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04405 55 188 C3H Transcription Factor Family AT3G10910 46.377 4.09e-38 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04405 K19040 - gmx:100780127 280.796