Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04404 ATGTATGCTTCTACTTCCTTTACTTCACAATTGGTACATGAGCTTCTTGTTGACTCTCACACAAGAAGGCTACTCTTCCAAAACCTTGTTGATCATCAATCACTAACCAACTCTCCTGTTTTAACAAATAACCATAATTCAACACACTCACATTTCGGAGCTCGTGAATTTGATGCAAATGTTGTGATGATAGTTGCAGTTCTATTGTGTGCGCTTGTATGTTCACTTGTATTAAACTCTATCATAAGGTGTGCCTTGAGGTTTTCAAACGTAGCCATCAACAACGCCTCTTCTTCGAGTTCGAGCAGTAACTCTTCACCTCAATCGGTGAACATAGGAATCAAGAAGAAAGCTCTCAAGACATTCCCAATAGTGAGTTATTCAACTGAGATGAAATTACCGTGTTTGGATACAGAGTGTGTGATATGTATCTATGACTTTACAAAGGGTGAAAAGGTGCGCGTATTACCTAAATGCAACCATGGTTTTCATGTTCGTTGCATTGACAAATGGCTAAAGGAACACTCATCGTGTCCAAAGTGCAGACAATGTCTTCTTGAAACATGTAGAAAGGTTGGTGAGTCGCAGGTGCAACCAATTGTGCTGTCAGTGCCAGAAATTATTATACAGATTCAACCACTAGACCATGAAACTGTTGAACGTAACTATAGGGAAGAAAGCAGATAA 687 0.3945 MYASTSFTSQLVHELLVDSHTRRLLFQNLVDHQSLTNSPVLTNNHNSTHSHFGAREFDANVVMIVAVLLCALVCSLVLNSIIRCALRFSNVAINNASSSSSSSNSSPQSVNIGIKKKALKTFPIVSYSTEMKLPCLDTECVICIYDFTKGEKVRVLPKCNHGFHVRCIDKWLKEHSSCPKCRQCLLETCRKVGESQVQPIVLSVPEIIIQIQPLDHETVERNYREESR 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04404 228 PANTHER RING-H2 FINGER PROTEIN ATL78 17 218 IPR044602 GO:0016567|GO:0016740
Vivi5g04404 228 SMART ring_2 140 181 IPR001841 -
Vivi5g04404 228 FunFam RING-H2 finger protein ATL73 99 187 - -
Vivi5g04404 228 Pfam Ring finger domain 139 182 IPR001841 -
Vivi5g04404 228 SUPERFAMILY RING/U-box 122 188 - -
Vivi5g04404 228 CDD RING-H2_EL5-like 139 182 - -
Vivi5g04404 228 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Vivi5g04404 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 186 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04404 Vivi-Chr5 141724104 141724896 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04404 57 186 C3H Transcription Factor Family AT3G10910 52.899 1.12e-42 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04404 K19040 - gmx:100780127 286.96