Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04401 ATGTATGCTTCTACTTCCTTTACTTCACAGCTTGAGTTTCTTGTGGAATCCCACACAAGAAGGCTACTCTACCAAGGCCCAATTGATCATCAATCACTAACCAACTCTGCTGTTCTCACACACAACAGTTCAACAAATTCATATTTTGGTATTAGCGAAACTGAAGCAAATGTTGTGATGATACTTGCAGTCCTATTGTGTGCTCTTATTTGCTCACTTGCATTAAACTCCATCATAAGGTGTGCTTTAAGGTTTTCAAACGTAGCCATCAACAACAGCTCTTCACCTCAATTGGCCAACAAAGGAATCAAGAAGAAAGCTCTCAAAACATTCCCAACAGTGAGTTATTCAACTGACCTGAAATTACCAAGTTTGGATACGGAGTGTGTCATATGTCTCTCGGAATTTACAAAGGATGAAAAGGTGCGGATTTTGCCTAAATGCAACCATGGTTTTCATGTTTGTTGCATTGACAAATGGTTAAAGGAACACTCATCATGCCCCAAGTGCAGACAGTGCCTTCTTGAGACTTGTCGAAAGATTGTTGGATCGGACGCACCACCACCTATGTTGCCGATGCCAGAAACTATTATAACAATTCAACCATTAAACCGTGAAGCTGTTGCGCTTAGCTATAGGGAAGAAAGCAGATAA 654 0.4067 MYASTSFTSQLEFLVESHTRRLLYQGPIDHQSLTNSAVLTHNSSTNSYFGISETEANVVMILAVLLCALICSLALNSIIRCALRFSNVAINNSSSPQLANKGIKKKALKTFPTVSYSTDLKLPSLDTECVICLSEFTKDEKVRILPKCNHGFHVCCIDKWLKEHSSCPKCRQCLLETCRKIVGSDAPPPMLPMPETIITIQPLNREAVALSYREESR 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04401 217 CDD RING-H2_EL5-like 128 171 - -
Vivi5g04401 217 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Vivi5g04401 217 SUPERFAMILY RING/U-box 108 176 - -
Vivi5g04401 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 175 IPR013083 -
Vivi5g04401 217 PANTHER RING-H2 FINGER PROTEIN ATL78 13 207 IPR044602 GO:0016567|GO:0016740
Vivi5g04401 217 Pfam Ring finger domain 128 171 IPR001841 -
Vivi5g04401 217 FunFam RING-H2 finger protein ATL73 91 176 - -
Vivi5g04401 217 SMART ring_2 129 170 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04401 Vivi-Chr5 141685329 141686198 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04401 42 175 C3H Transcription Factor Family AT3G10910 49.333 6.70e-39 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04401 K19040 - gmx:100780127 286.96