Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04393 ATGAGCAGAAAGTTTTCCCCGATTAAGGATCTCAACGATTCAAAAGAAACATGGAGATTGGCCGTTCGAGTTGTTGATTTTTGGAGTGTTATCAACAGCAAGGGTAAGGAGCATCTGGAGATGGTTCTAATGGACGTATCGGGTGATAGGATACAAGTTTTGATTCGTTCTGACCACACACCAAAATGGAAAGCAAGAATACGCGAAAACATGTCTTGCATAATCAACAATGGAACTGTATATGAAAACGATTTTCAGTGGAAGCTTTGTGATCACGACAAGAAATTTGTGTTTATTGGTGGTACAACTGTTAAGGAAGTTGAAATTCAGAACCTTCCTCCCAAAAGATTTTTTTTCAAAGACTTTAATGATATTCTTGGAGGAAATTGTGAGATGAACCGACTTGAAGATATCATTGGTGTGGTTCAAGAAATCAACAATTTTCAATACAACAATTCTGGAAAAAAATCATTTGTTTCACTGAGTCTTAAAGACTTGAAAGGAGTCATTGTTAACTGCACATTATGGGAGAGCTACGGAACAAAATTTTTGGACTTCTACCACGACGAAAAAAACAGTGGTGCTATTGTAATAATACTAACTCATGCAATGATAAAGGAATCACAAGTCTCAAATGGTTGGAGTGGATCTAAGTTGCTTATTAACGAAGACATTCCAGAGATAACTGAGTATTTATCAAAGTTACCGTCAAATGAGCAGACTGAAAAGCCTTCGCAGTCTTCGAAGGGAATGTCTCTTTGGTCTGGTGCCTCTCAATTCACCCCAGTCGAAAGTTTCGTTCATAAGGCCAAGTGTATTTCTCTCAGTGAACTTTGCAAGGTGAAACAGGACATGTTATGCGTTACTGTTGGAACAACTCAAAGATTTTTTGTCTCAAAACACGGTTGGTTTTATTATGGGTGTACTAAATGTTCTCTAAAGGCATCTGATGTGAACAATCCATACAAATGTTCATGTGGACAGAATGTAGAACATGCCATACCGAGGTATCGAGTTGACATATATGTGGTTGATGGTGATTCCAAATTTCGCTTTGTGTTTTGGGACTCTGACTGTGCCGACATTATTGGAAAGTCTGCTGATAGTATTTATAAAGCAATGCTTGAGGAAGGTGACGACGACCCAATGATATATCCAGATGATCTTGACATGCTACTTGGTAAAAAGATGGCGTTTAGGGCTAAAGTTCAGCCAACATTTGGCCAAGCATCTGTTTGGAAACTTTCCTATGATGAAGAGTTTGTAAAGGAAATTGAGAAAGATTATATTACTGATGAAGGAGATAGCAAATCTTTAAACCAAAACCCAGTTGTTGATCGTGTTGATGAATCCATTGAGTCGTTGTCGGCATATGGAGAAAATGATCCTGATAAACAAGTGACCAATACTCCATCCAAAGGAAGTCCTGTTTATCTTGATGCTGAAGATTCCGAATTACAAGCGTATGGTACTACCCAGCTCTCAGGAACCAAGCCTGCAAAGAAAGTTAAGATTGAATCGGATGCATGA 1530 0.3843 MSRKFSPIKDLNDSKETWRLAVRVVDFWSVINSKGKEHLEMVLMDVSGDRIQVLIRSDHTPKWKARIRENMSCIINNGTVYENDFQWKLCDHDKKFVFIGGTTVKEVEIQNLPPKRFFFKDFNDILGGNCEMNRLEDIIGVVQEINNFQYNNSGKKSFVSLSLKDLKGVIVNCTLWESYGTKFLDFYHDEKNSGAIVIILTHAMIKESQVSNGWSGSKLLINEDIPEITEYLSKLPSNEQTEKPSQSSKGMSLWSGASQFTPVESFVHKAKCISLSELCKVKQDMLCVTVGTTQRFFVSKHGWFYYGCTKCSLKASDVNNPYKCSCGQNVEHAIPRYRVDIYVVDGDSKFRFVFWDSDCADIIGKSADSIYKAMLEEGDDDPMIYPDDLDMLLGKKMAFRAKVQPTFGQASVWKLSYDEEFVKEIEKDYITDEGDSKSLNQNPVVDRVDESIESLSAYGENDPDKQVTNTPSKGSPVYLDAEDSELQAYGTTQLSGTKPAKKVKIESDA 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04393 509 Gene3D - 265 427 IPR012340 -
Vivi5g04393 509 MobiDBLite consensus disorder prediction 461 475 - -
Vivi5g04393 509 Pfam Domain of unknown function DUF223 40 114 IPR003871 -
Vivi5g04393 509 MobiDBLite consensus disorder prediction 456 509 - -
Vivi5g04393 509 SUPERFAMILY Nucleic acid-binding proteins 4 107 IPR012340 -
Vivi5g04393 509 Gene3D - 110 246 IPR012340 -
Vivi5g04393 509 PANTHER OS03G0429900 PROTEIN 5 503 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi5g04393 509 Gene3D - 2 107 IPR012340 -
Vivi5g04393 509 CDD RPA1_DBD_B_like 137 231 - -
Vivi5g04393 509 CDD RPA1_DBD_A_like 19 104 - -
Vivi5g04393 509 SUPERFAMILY Nucleic acid-binding proteins 282 406 IPR012340 -
Vivi5g04393 509 SUPERFAMILY Nucleic acid-binding proteins 118 241 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04393 Vivi-Chr5 141525388 141528130 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04393 1 379 Core DNA Replication Machinery Family AT5G08020 23.192 2.53e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04393 - - vvo:131626014 790.415