Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04377 ATGGACTTCGACGAGTACGACTACTTGGAGAAGACGGTGGAGGAGCTTCAGGAAGACAAAGATTCTTCCCGAAAGAAGAAAATTGACACCGCCGACATTAAATCCGAGAGGACTTACCGGAAGCGCGATGTTGACGACGATCTGAACGGCGAAGATAGGCGGAGCAAAAGGTCTCGTGGCGAAGACGAGAATGGCTCTAAAAAAGATCGCGATAGAGATAGAGACAGAGAGAAAGATCGTGACCGTGAACGATCTTCCGGCCGCCATAGGGAGAGGGAGAGAGATAGGGATGGAGAGAAAGGTAGTAGAGAGAAAGAGAGGGAGAGGGACGGAGAGAAAGGTAGTAGAGACAGAGAGAAAGATAAGGATAGGGATAGAGAGAGGGAGAAGGAGAGGGAGAGGAGGGATAAGGAAAGGGAAAAGGAACGGGAAAGAAGAGAGAGGGAGAGAGAGAAGGAACGGGAGAGGGAAAAGGAGGAGAAAGAGAGACCTAGGAGAAGTATGAGTCGTCCTGAGAGAGATAGAGGAGAAAGAGTAGAAAGAGAGCGGGATTTCGAAAATAGAGATGGCAGGAGGTTCAGGGATAAAAAAGATAACGTGGAACCTGAAGCAGACCCAGAAAGGGATCAGAGAACTGTTTTTGCCTATCAGATGCCTTTAAAAGCAACAGAGAGAGATGTATACGAGTTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTCCGTCTAATCATGGATCGGAACTCAAGAAGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCGATGTCAGTGCCAATGGCAATTGCTATCTCCGGCCAATTACTTCTTGGGCAGCCTGTAATGGTGAAACCTTCTGAAGCTGAAAAAAATCTTGTTCAGTCTACTGCTTCCAGTGGAGCTGCTGGTGTAGTAGGACCATATGGAGCAGTGGACAGAAAATTGTATGTGGGGAATCTTCATTTCAACATGACCGAGGCTAATCTGCGAGAGATTTTTGAGCCATTTGGTCAGATTGAGGTTGTACAATTACCTCTTGACATGGAGACAGGACACTGCAAAGGTTTTGGGTTTGTTCAGTTTGCCCATCTTGAACATGCCAAGGCAGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGAACTATAAAGGTTTCATCTGTTACAGATCATGTTGGAAGTCAAGATACAACTGCAAAATCTGCAGATTTTGATGATGATGAAGGTGGATTGACTTTAAATGCCCATTCAAGAGCATTGCTTATGCAAAGGTTGGCTGGTGCTGACATTCCCACAAGCATTGGTGTGCCAATAGTGAATGGATCAGTTCCTGTTCAGCAGGCTTTTAGCATGCCTATCGGTAATCCAGGTGTTATACCTGCCTCCGGTCTACCAACACAAGTTATGCCTACCCCTGTGGTAGAACCAGTTGGAATCCCCAGTGAGTGTTTATTATTGAAGAATATGTTTGATCCAAGCACCGAGACTGAACCAGATTTTGATATAGACATTAAAGAGGATGTAGAGGAGGAGTGTTCTAAGTATGGCCGAGTGAAGCATATTTATGTCGACAAAAGAAGTGCAGGTTTTGTGTACTTGCAGTTTGACACAGTTGAAGCATCAAGTGCCGCACAACGGGCAATGCACATGAGATGGTTTGCACGAAGGCTGATTACAGCTATCTTCATGCAACCACATTTATATGAAGCTAAGTTTAACGGGGAATCTTGA 1734 0.4504 MDFDEYDYLEKTVEELQEDKDSSRKKKIDTADIKSERTYRKRDVDDDLNGEDRRSKRSRGEDENGSKKDRDRDRDREKDRDRERSSGRHRERERDRDGEKGSREKERERDGEKGSRDREKDKDRDREREKERERRDKEREKERERREREREKEREREKEEKERPRRSMSRPERDRGERVERERDFENRDGRRFRDKKDNVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIAISGQLLLGQPVMVKPSEAEKNLVQSTASSGAAGVVGPYGAVDRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADFDDDEGGLTLNAHSRALLMQRLAGADIPTSIGVPIVNGSVPVQQAFSMPIGNPGVIPASGLPTQVMPTPVVEPVGIPSECLLLKNMFDPSTETEPDFDIDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLQFDTVEASSAAQRAMHMRWFARRLITAIFMQPHLYEAKFNGES 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04377 577 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 391 IPR000504 GO:0003723
Vivi5g04377 577 SUPERFAMILY RNA-binding domain, RBD 313 566 IPR035979 GO:0003676
Vivi5g04377 577 MobiDBLite consensus disorder prediction 15 210 - -
Vivi5g04377 577 FunFam Splicing factor CC1-like 297 402 - -
Vivi5g04377 577 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 385 IPR000504 GO:0003723
Vivi5g04377 577 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 506 559 IPR000504 GO:0003723
Vivi5g04377 577 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 279 IPR000504 GO:0003723
Vivi5g04377 577 Gene3D - 309 405 IPR012677 -
Vivi5g04377 577 SMART rrm1_1 314 387 IPR000504 GO:0003723
Vivi5g04377 577 SMART rrm1_1 484 561 IPR000504 GO:0003723
Vivi5g04377 577 SMART rrm1_1 212 284 IPR000504 GO:0003723
Vivi5g04377 577 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 406 501 IPR029123 -
Vivi5g04377 577 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 288 IPR000504 GO:0003723
Vivi5g04377 577 CDD RRM1_RBM39_like 212 284 - -
Vivi5g04377 577 Gene3D - 204 297 IPR012677 -
Vivi5g04377 577 NCBIfam splicing factor, CC1-like family 102 573 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vivi5g04377 577 CDD RRM3_RBM39_like 482 564 - -
Vivi5g04377 577 Gene3D - 478 576 IPR012677 -
Vivi5g04377 577 Coils Coil 120 163 - -
Vivi5g04377 577 SUPERFAMILY RNA-binding domain, RBD 203 298 IPR035979 GO:0003676
Vivi5g04377 577 FunFam Splicing factor, CC1-like protein 478 577 - -
Vivi5g04377 577 Coils Coil 6 26 - -
Vivi5g04377 577 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 573 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vivi5g04377 577 FunFam Splicing factor CC1-like 137 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04377 Vivi-Chr5 141338013 141344350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04377 285 386 Eukaryotic Initiation Factors Gene Family AT4G34110 31.068 1.95e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04377 K13091 - gmx:100818613 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04377 5 141338013 141344350 Vivi3g02520 3 42227239 42234483 ECH
Vivi5g04377 5 141338013 141344350 Vivi5g04377 5 141338013 141344350 ECH
Vivi5g04377 5 141338013 141344350 Vivi3g02520 3 42227239 42234483 PCT