Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04375 ATGTTAATGATGTTTCCTGGTCTTAATAGAGAGGGAGAGATGTCAGCTATGATTTCTGCTTTAACACATGTCATATGTGGTGATGATCACAATCACAACAATGATGGTGGGGGTGATGAGAGTCAGAATATGAATCATGATATCAAGCCTTTTGTTTCTGCAATACAATCTTCAACTTCTTTGTCTTATGGTGATAGTTCTGCTCTCAAGAGAAGAAGGGAGGATGGTGGATTTTGTGACAATAAGCATCAAGTTGTGGAATGTTCGAGCGAATGGACGAATACGATAATAACTACGGAAAGGAACCAAAGTGAAGAAACTATATATGAATACAGAACAGACAATAACAATGTGCCAAATGAAGATGAACCGAGAAGAAAATACAGAGGAGTGAGACAGAGGCCATGGGGAAAATGGGCTGCTGAGATAAGAGATCCTTTCAAAGCTACAAGAGTATGGTTAGGAACATTTGAAACAGCTGAAGATGCAGCCAAAGCCTATGATCAAGCTTCATTGCGTTTCAGAGGAAACAAAGCTAAACTCAACTTCCCTGAAAATGTTAGACTCAAGCAACAGCCTTTTGTTGATCCACCAATGACTCATTTGAGTGGTTCACATTCTAGTACTGATTCAATGGTTCAGAATGAAGCTATTTATACTTTGCAAGGTTCCAATAAGTATTATGATTATTTTCATGGTCAGAATATTCCCATGGCTTCTTCTCTTCAGAGTTCAATGTCGCCGCCATCAGCTTCATATTCTTCTTCTTTTAGTTCTTCACAGACAATTTCTTCAATTCCTTCTGTCTATTCTACTCAGTTGCCACCATGGCCTTCTGGATATAGCTCCTCTCCTTCCGGCTGA 864 0.3935 MLMMFPGLNREGEMSAMISALTHVICGDDHNHNNDGGGDESQNMNHDIKPFVSAIQSSTSLSYGDSSALKRRREDGGFCDNKHQVVECSSEWTNTIITTERNQSEETIYEYRTDNNNVPNEDEPRRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAEDAAKAYDQASLRFRGNKAKLNFPENVRLKQQPFVDPPMTHLSGSHSSTDSMVQNEAIYTLQGSNKYYDYFHGQNIPMASSLQSSMSPPSASYSSSFSSSQTISSIPSVYSTQLPPWPSGYSSSPSG 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04375 287 Gene3D AP2/ERF domain 126 186 IPR036955 GO:0003700|GO:0006355
Vivi5g04375 287 PRINTS Ethylene responsive element binding protein signature 128 139 IPR001471 GO:0003700|GO:0006355
Vivi5g04375 287 PRINTS Ethylene responsive element binding protein signature 150 166 IPR001471 GO:0003700|GO:0006355
Vivi5g04375 287 SUPERFAMILY DNA-binding domain 127 185 IPR016177 GO:0003677
Vivi5g04375 287 SMART rav1_2 127 190 IPR001471 GO:0003700|GO:0006355
Vivi5g04375 287 Pfam AP2 domain 127 176 IPR001471 GO:0003700|GO:0006355
Vivi5g04375 287 FunFam Ethylene-responsive transcription factor 2 126 185 - -
Vivi5g04375 287 CDD AP2 127 186 IPR001471 GO:0003700|GO:0006355
Vivi5g04375 287 PANTHER DNA-BINDING DOMAIN 90 244 IPR044808 GO:0003700|GO:0009873
Vivi5g04375 287 ProSiteProfiles AP2/ERF domain profile. 127 184 IPR001471 GO:0003700|GO:0006355
Vivi5g04375 287 MobiDBLite consensus disorder prediction 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04375 Vivi-Chr5 141308855 141310550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04375 119 188 AP2-EREBP Transcription Factor Family AT5G13330 77.465 9.65e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi5g04375 AP2 4.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04375 - - mtr:11428940 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04375 5 141308855 141310550 Vivi5g04375 5 141308855 141310550 ECH