Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04354 ATGTCTGAAATTGTTATAAACAATTTATTTGAGGAACATATTCCCACACCAATGGGTTTCATTCCACTCCCAACAAACCTAACTTTCCCTTCTTTGGGTTGCAATAATCAATCTTTGAAACCTTTCACTTCCATAGCTTCTTCACTTACATCTGAAATATCATCAGATTCTACATCACAAACCCTACTCACAACAACAACCAATCCTCAAAAATCAAAAGAATATCTCACTCCAAGCTTTGAAGATGGAACTACTCAATTCCTATCCTTGCAGAGATCCACTCTAAATCCATGGGCAATATTAGGAGGAGGAGTAGGTGATCATTACTTCAATAATAATAATAATGATAAGAGAAGTGGAGTAGTTCATGATAATTATCATTTGGGAGTTTGTTCTACTTCTAGCATGAAGATGAAGAAAATGAAGGGAAGAAAGAAAGTGAGAGAGCCTAGGTTTTGCTTCAAGACACTGAGTGCTGATGTTGATGTTTTGGATGATGGTTACAAGTGGAGGAAGTATGGACAAAAAGTTGTAAAGAACACACAACACCCAAGAAGCTATTACCGTTGCACTCAAGAGAATTGTCGTGTAAAGAAACGTGTGGAGCGTTTAGGGGAAGATCCAAGGATGGTGATAACCACATATGAAGGGAGACATGTACACACTCCATCAAATGAGCTTGAAGATTCTCAAAATCAATCTCAATTTGAGAGTTTCTTGTGGTAG 726 0.3747 MSEIVINNLFEEHIPTPMGFIPLPTNLTFPSLGCNNQSLKPFTSIASSLTSEISSDSTSQTLLTTTTNPQKSKEYLTPSFEDGTTQFLSLQRSTLNPWAILGGGVGDHYFNNNNNDKRSGVVHDNYHLGVCSTSSMKMKKMKGRKKVREPRFCFKTLSADVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQENCRVKKRVERLGEDPRMVITTYEGRHVHTPSNELEDSQNQSQFESFLW 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04354 241 MobiDBLite consensus disorder prediction 226 241 - -
Vivi5g04354 241 MobiDBLite consensus disorder prediction 217 241 - -
Vivi5g04354 241 FunFam WRKY transcription factor 57 149 224 - -
Vivi5g04354 241 Gene3D WRKY domain 150 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi5g04354 241 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 43 226 IPR044810 GO:0003700
Vivi5g04354 241 ProSiteProfiles WRKY domain profile. 159 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi5g04354 241 SMART WRKY_cls 164 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi5g04354 241 SUPERFAMILY WRKY DNA-binding domain 159 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi5g04354 241 Pfam WRKY DNA -binding domain 165 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04354 Vivi-Chr5 141066892 141068454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04354 123 241 WRKY Transcription Factor Family AT4G39410 70.968 2.59e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi5g04354 WRKY 1.6e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04354 5 141066892 141068454 Vivi5g04354 5 141066892 141068454 ECH